Gfo_R004859 (Geospiza fortis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Gfo_R004859 T174814_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.995 0.995
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.926 0.926
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.901 0.901
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.901 0.901
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.901 0.901
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.872 0.872
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.872 0.872
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004859 EBF1 1 203

Links

Other EBF1 family TFs
Other Geospiza fortis TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EBF2 Gallus gallus ENSGALG00000000242 I 1.000
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 1.000
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 1.000
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 1.000
Aan_R009520 Calypte anna Aan_R009520 I 1.000
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 1.000
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 1.000
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.995
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.995
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.995
EBF2 Bos taurus ENSBTAG00000040390 I 0.995
Ebf2 Mus musculus ENSMUSG00000022053 D 0.995
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.995
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.995
EBF2 Homo sapiens ENSG00000221818 D 0.995
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.995
EBF2 Canis familiaris ENSCAFG00000008918 I 0.995
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.995
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I 0.995
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.995
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.995
EBF2 Sus scrofa ENSSSCG00000009655 I 0.995
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.995
EBF2 Pteropus vampyrus ENSPVAG00000024254 I 0.995
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.995
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.995
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.995
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.995
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.990
EBF2 Callithrix jacchus ENSCJAG00000019921 I 0.985
Pvit_12046 Pogona vitticeps Pvit_12046 I 0.975
EBF1 Equus caballus ENSECAG00000007964 I 0.975
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I 0.975
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I 0.975
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I 0.975
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I 0.975
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.966
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.966
ENSLOCG00000015225 Lepisosteus oculatus ENSLOCG00000015225 I 0.961
ebf2.L Xenopus laevis XB-GENE-6252857 I 0.961
ebf2.S Xenopus laevis XB-GENE-971141 I 0.956
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.956
ENSPFOG00000009617 Poecilia formosa ENSPFOG00000009617 I 0.951
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.951
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I 0.946
ebf2 Oryzias latipes ENSORLG00000006408 I 0.946
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.941
EBF1 Meleagris gallopavo ENSMGAG00000004896 I 0.936
ENSAPLG00000015476 Anas platyrhynchos ENSAPLG00000015476 I 0.936
Sakowv30011033m.g Saccoglossus kowalevskii Sakowv30011033m.g I 0.935
ENSAMEG00000003291 Ailuropoda melanoleuca ENSAMEG00000003291 I 0.929
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.926
Ebf3 Mus musculus ENSMUSG00000010476 I 0.926
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I 0.926
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.926
ebf3 Xenopus tropicalis XB-GENE-962543 I 0.926
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.926
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.926
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.926
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.926
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I 0.926
EBF3 Cavia porcellus ENSCPOG00000005096 I 0.926
EBF3 Homo sapiens ENSG00000108001 D 0.926
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.926
ENSSSCG00000010757 Sus scrofa ENSSSCG00000010757 I 0.921
EBF3 Tursiops truncatus ENSTTRG00000014010 I 0.921
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.921
ebf2 Danio rerio ENSDARG00000042525 I 0.916
ebf3a Danio rerio ENSDARG00000100244 I 0.916
EBF4 Oryzias latipes ENSORLG00000020414 I 0.916
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I 0.916
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I 0.916
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I 0.916
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.916
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.911
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I 0.911
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I 0.911
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I 0.911
Aan_R007097 Calypte anna Aan_R007097 I 0.911
ebf3a Oryzias latipes ENSORLG00000005870 I 0.911
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I 0.911
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I 0.911
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.911
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I 0.911
ebf3a Takifugu rubripes ENSTRUG00000005721 I 0.906
EBF2 Felis catus ENSFCAG00000003607 I 0.906
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.906
EBF2 Monodelphis domestica ENSMODG00000016702 I 0.906
Ebf1 Rattus norvegicus ENSRNOG00000028845 I 0.901
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.901
EBF1 Echinops telfairi ENSETEG00000011711 I 0.901
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I 0.901
EBF1 Ornithorhynchus anatinus ENSOANG00000012338 I 0.901
ENSLOCG00000001693 Lepisosteus oculatus ENSLOCG00000001693 I 0.901
EBF1 Gorilla gorilla ENSGGOG00000000033 I 0.901
EBF1 Callithrix jacchus ENSCJAG00000019016 I 0.901
Ebf1 Mus musculus ENSMUSG00000057098 D 0.901
EBF1 Homo sapiens ENSG00000164330 D 0.901
EBF1 Monodelphis domestica ENSMODG00000008198 I 0.901
EBF1 Bos taurus ENSBTAG00000037508 I 0.901
ENSPPYG00000015995 Pongo abelii ENSPPYG00000015995 I 0.901
EBF1 Pan troglodytes ENSPTRG00000017477 I 0.901
EBF3 Tupaia belangeri ENSTBEG00000005858 I 0.899
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I 0.899
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I 0.897
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I 0.897
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I 0.897
EBF1 Oryzias latipes ENSORLG00000007471 I 0.897
Pvit_16838 Pogona vitticeps Pvit_16838 I 0.897
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I 0.897
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.897
EBF1 Microcebus murinus ENSMICG00000010036 I 0.892
EBF1 Takifugu rubripes ENSTRUG00000009320 I 0.892
ENSXMAG00000000489 Xiphophorus maculatus ENSXMAG00000000489 I 0.892
ebf1b Danio rerio ENSDARG00000069196 I 0.892
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I 0.892
ebf1a Danio rerio ENSDARG00000099849 I 0.892
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I 0.887
EBF1 Canis familiaris ENSCAFG00000017318 I 0.887
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.887
EBF1 Oryctolagus cuniculus ENSOCUG00000008985 I 0.887
EBF1 Felis catus ENSFCAG00000008547 I 0.887
EBF1 Gasterosteus aculeatus ENSGACG00000018450 I 0.887
EBF1 Cavia porcellus ENSCPOG00000026184 I 0.887
EBF1 Oryzias latipes ENSORLG00000002342 I 0.882
EBF4 Monodelphis domestica ENSMODG00000005256 I 0.882
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.877
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.877
EBF2 Equus caballus ENSECAG00000014179 I 0.874
EBF4 Canis familiaris ENSCAFG00000006631 I 0.872
EBF4 Homo sapiens ENSG00000088881 D 0.872
ENSBTAP00000042518-D1 Bos grunniens ENSBTAP00000042518-D1 I 0.872
Ebf4 Rattus norvegicus ENSRNOG00000007408 I 0.872
EBF4 Bos taurus ENSBTAG00000037757 I 0.872
EBF4 Sus scrofa ENSSSCG00000007171 I 0.872
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I 0.872
EBF4 Gorilla gorilla ENSGGOG00000015503 I 0.872
EBF4 Otolemur garnettii ENSOGAG00000004688 I 0.872
EBF1 Taeniopygia guttata ENSTGUG00000000593 I 0.872
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.872
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I 0.872
EBF4 Myotis lucifugus ENSMLUG00000023832 I 0.872
Ebf4 Mus musculus ENSMUSG00000053552 D 0.872
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I 0.872
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I 0.872
EBF4 Pteropus vampyrus ENSPVAG00000006830 I 0.867
EBF4 Cavia porcellus ENSCPOG00000004862 I 0.867
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.862
EBF4 Ochotona princeps ENSOPRG00000013703 I 0.862
ENSOARG00000005967 Ovis aries ENSOARG00000005967 I 0.857
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.857
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I 0.852
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.847
ENSNLEG00000001518 Nomascus leucogenys ENSNLEG00000001518 I 0.842
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.842
EFV50386 Trichinella spiralis EFV50386 I 0.837
ebf3b Danio rerio ENSDARG00000091287 I 0.837
D917_06660 Trichinella nativa D917_06660 I 0.837
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.837
LotgiG225788 Lottia gigantea LotgiG225788 I 0.837
L798_15574 Zootermopsis nevadensis L798_15574 I 0.833
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.833
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I 0.833
CGI_10023990 Crassostrea gigas CGI_10023990 I 0.833
ENSONIG00000013342 Oreochromis niloticus ENSONIG00000013342 I 0.831
KGM_09934 Danaus plexippus KGM_09934 I 0.828
NV10306 Nasonia vitripennis NV10306 I 0.828
CapteG93575 Capitella teleta CapteG93575 I 0.828
Alligator_sinensis_CCG006299.1 Alligator sinensis Alligator_sinensis_CCG006299.1 I 0.823
PHUM119360 Pediculus humanus PHUM119360 I 0.818
GM20182 Drosophila sechellia FBgn0175065 I 0.818
GG22397 Drosophila erecta FBgn0114569 I 0.818
kn Drosophila melanogaster FBgn0001319 D 0.818
TC001270 Tribolium castaneum TC001270 I 0.818
GE12286 Drosophila yakuba FBgn0230042 I 0.818
GA24435 Drosophila pseudoobscura FBgn0245832 I 0.813
GK23295 Drosophila willistoni FBgn0225257 I 0.813
EBF4 Felis catus ENSFCAG00000014453 I 0.813
GL10656 Drosophila persimilis FBgn0148266 I 0.813
GF11778 Drosophila ananassae FBgn0088818 I 0.813
GB42304 Apis mellifera GB42304 I 0.813
L596_g20342 Steinernema carpocapsae L596_g20342 I 0.808
L898_g8304 Steinernema monticolum L898_g8304 I 0.808
L893_g31120 Steinernema glaseri L893_g31120 I 0.808
AGAP011437 Anopheles gambiae AGAP011437 I 0.808
L889_g1820 Steinernema feltiae L889_g1820 I 0.808
GH20479 Drosophila grimshawi FBgn0127942 I 0.808
MDOA011385 Musca domestica MDOA011385 I 0.808
GJ21945 Drosophila virilis FBgn0209060 I 0.808
ebf3.L Xenopus laevis XB-GENE-962547 I 0.805
EBF4 Dasypus novemcinctus ENSDNOG00000049548 I 0.803
nAv.1.0.1.g03521 Acanthocheilonema viteae nAv.1.0.1.g03521 I 0.803
GI21022 Drosophila mojavensis FBgn0143754 I 0.803
PTRK_0001642500 Parastrongyloides trichosuri PTRK_0001642500 I 0.803
EBF1 Tursiops truncatus ENSTTRG00000009929 I 0.803
ENSNLEG00000004218 Nomascus leucogenys ENSNLEG00000004218 I 0.803
Bm6296 Brugia malayi Bm6296 I 0.798
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I 0.798
nLs.2.1.2.g08363 Litomosoides sigmodontis nLs.2.1.2.g08363 I 0.798
LOAG_18199 Loa loa LOAG_18199 I 0.798
WUBG_00630 Wuchereria bancrofti WUBG_00630 I 0.793
DME_0000265301 Dracunculus medinensis DME_0000265301 I 0.793
HelroG112029 Helobdella robusta HelroG112029 I 0.793
ENSFALG00000008502 Ficedula albicollis ENSFALG00000008502 I 0.792
EBF1 Gallus gallus ENSGALG00000003699 I 0.792
SSTP_0000472000 Strongyloides stercoralis SSTP_0000472000 I 0.788
SVE_0119400 Strongyloides venezuelensis SVE_0119400 I 0.788
SPAL_0001132500 Strongyloides papillosus SPAL_0001132500 I 0.788
CBN13270 Caenorhabditis brenneri CBN13270 I 0.788
DAPPUDRAFT_22285 Daphnia pulex DAPPUDRAFT_22285 I 0.788
Afo_R002906 Aptenodytes forsteri Afo_R002906 I 0.788
EBF1 Takifugu rubripes ENSTRUG00000013805 I 0.784
EBF4 Oryctolagus cuniculus ENSOCUG00000023917 I 0.783
ENSPANG00000007524 Papio anubis ENSPANG00000007524 I 0.780
EBF1 Procavia capensis ENSPCAG00000013495 I 0.779
CRE15310 Caenorhabditis remanei CRE15310 I 0.778
TCLT_0000613901 Thelazia callipaeda TCLT_0000613901 I 0.773
HPLM_0000807901 Haemonchus placei HPLM_0000807901 I 0.773
SVUK_0001114801 Strongylus vulgaris SVUK_0001114801 I 0.773
NECAME_10162 Necator americanus NECAME_10162 I 0.773
HCOI01630600 Haemonchus contortus HCOI01630600 I 0.773
HNAJ_0001308901 Hymenolepis nana HNAJ_0001308901 I 0.772
ENSTSYG00000019489 Tarsius syrichta ENSTSYG00000019489 I 0.768
RSKR_0000832900 Rhabditophanes kr3021 RSKR_0000832900 I 0.768
EBF4 Equus caballus ENSECAG00000010003 I 0.762
EBF3 Ornithorhynchus anatinus ENSOANG00000012326 I 0.759
CBG07590 Caenorhabditis briggsae CBG07590 I 0.759
EBF3 Echinops telfairi ENSETEG00000014060 I 0.759
ENSAPLG00000012647 Anas platyrhynchos ENSAPLG00000012647 I 0.759
EBF4 Gasterosteus aculeatus ENSGACG00000016862 I 0.758
MCOS_0000276101 Mesocestoides corti MCOS_0000276101 I 0.754
SMU15024001 Schmidtea mediterranea SMU15024001 I 0.754
BXY_1639700 Bursaphelenchus xylophilus BXY_1639700 I 0.754
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I 0.742
ENSNLEG00000009110 Nomascus leucogenys ENSNLEG00000009110 I 0.739
ENSCSAG00000010974 Chlorocebus sabaeus ENSCSAG00000010974 I 0.739
EBF4 Procavia capensis ENSPCAG00000011947 I 0.735
AAEL003436 Aedes aegypti AAEL003436 I 0.735
scaffold24-EXSNAP2012.58 Pristionchus exspectatus scaffold24-EXSNAP2012.58 I 0.730
ASU_01180 Ascaris suum ASU_01180 I 0.730
T265_13606 Opisthorchis viverrini T265_13606 N 0.729
HDID_0000285701 Hymenolepis diminuta HDID_0000285701 I 0.729
ECANG7_02766 Echinococcus canadensis ECANG7_02766 I 0.729
csin100403 Clonorchis sinensis csin100403 N 0.729
HmN_000631100 Hymenolepis microstoma HmN_000631100 I 0.729
LCUP013861 Lucilia cuprina LCUP013861 I 0.720
EBF4 Macaca mulatta ENSMMUG00000021331 I 0.714
ENSPFOG00000007531 Poecilia formosa ENSPFOG00000007531 I 0.709
EBF4 Echinops telfairi ENSETEG00000015956 I 0.704