Solyc08g060840.1 (Solanum lycopersicum)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 Solyc08g060840.1 T180469_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.830 0.830
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.830 0.830
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g060840.1.1 FAR1 66 153

Links

Other FAR1 family TFs
Other Solanum lycopersicum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK04639.1 Cannabis sativa PK04639.1 I 0.898
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.888
TCM_002030 Theobroma cacao TCM_002030 I 0.886
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.886
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.886
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.886
Pm014858 Prunus mume Pm014858 I 0.875
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.875
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.875
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.875
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.875
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.865
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.865
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.865
mgf008053m Mimulus guttatus mgf008053m I 0.864
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.864
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.864
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.852
30106.m000672 Ricinus communis 30106.m000672 I 0.852
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.852
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.833
FAR1 Arabidopsis thaliana AT4G15090 D 0.811
Bo6g054750 Brassica oleracea Bo6g054750 I 0.811
Bra040696 Brassica rapa Bra040696 I 0.811
TCM_013043 Theobroma cacao TCM_013043 I 0.731
MDP0000286803 Malus domestica MDP0000286803 I 0.705
PK08903.1 Cannabis sativa PK08903.1 I 0.705
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.705
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.700
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.700
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.700
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.700
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.700
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.700