Pm014858 (Prunus mume)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Pm014858 T180990_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.886 0.886
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.886 0.886
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.705 0.705
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm014858 FAR1 76 163

Links

Other FAR1 family TFs
Other Prunus mume TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 1.000
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.989
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.966
PK04639.1 Cannabis sativa PK04639.1 I 0.955
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.955
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.944
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.932
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.932
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.932
TCM_002030 Theobroma cacao TCM_002030 I 0.920
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.920
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.920
30106.m000672 Ricinus communis 30106.m000672 I 0.920
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.920
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.910
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.910
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.910
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.909
mgf008053m Mimulus guttatus mgf008053m I 0.898
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.875
FAR1 Arabidopsis thaliana AT4G15090 D 0.867
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.867
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.846
Bra040696 Brassica rapa Bra040696 I 0.833
Bo6g054750 Brassica oleracea Bo6g054750 I 0.833
TCM_013043 Theobroma cacao TCM_013043 I 0.808
PK08903.1 Cannabis sativa PK08903.1 I 0.739
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.739
MDP0000286803 Malus domestica MDP0000286803 I 0.739
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.733
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.727
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.727
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.727
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.727
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.722
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.722
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.722
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.722
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.722
Pm014859 Prunus mume Pm014859 I 0.722
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.722
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.711
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.711
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.711
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.711
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.711
FHY3 Arabidopsis thaliana AT3G22170 D 0.705
mgf009829m Mimulus guttatus mgf009829m I 0.700
mgf014333m Mimulus guttatus mgf014333m I 0.700