Solyc07g043270.2 (Solanum lycopersicum)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 Solyc07g043270.2 T180467_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.867 0.867
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.867 0.867
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.711 0.711
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc07g043270.2.1 FAR1 90 193

Links

Other FAR1 family TFs
Other Solanum lycopersicum TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf009829m Mimulus guttatus mgf009829m I 0.967
mgf014333m Mimulus guttatus mgf014333m I 0.967
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.933
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.922
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.922
Pm014859 Prunus mume Pm014859 I 0.922
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.911
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.911
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.911
MDP0000286803 Malus domestica MDP0000286803 I 0.911
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.911
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.900
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.900
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.900
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.900
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.900
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.900
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.900
TCM_013043 Theobroma cacao TCM_013043 I 0.889
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.889
PK08903.1 Cannabis sativa PK08903.1 I 0.889
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.889
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.889
FHY3 Arabidopsis thaliana AT3G22170 D 0.867
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.856
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.856
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.856
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.844
Bra031330 Brassica rapa Bra031330 I 0.822
Bo5g098280 Brassica oleracea Bo5g098280 I 0.811
Bo1g105420 Brassica oleracea Bo1g105420 I 0.789
30106.m000672 Ricinus communis 30106.m000672 I 0.750
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.750
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.739
TCM_002030 Theobroma cacao TCM_002030 I 0.733
PK04639.1 Cannabis sativa PK04639.1 I 0.727
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.727
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.727
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.722
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.722
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.711
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.711
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.711
Pm014858 Prunus mume Pm014858 I 0.711
FAR1 Arabidopsis thaliana AT4G15090 D 0.711
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.708
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.708
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.708
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.708
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.700