Bra014417 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra014417 T205092_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.676 0.893
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.676 0.893
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.643 0.607
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.618 0.607
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.618 0.607
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra014417.1-P Homeodomain 28 83

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g100070 Brassica oleracea Bo4g100070 I 0.852
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.718
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.703
Ca_17608 Cicer arietinum Ca_17608 I 0.695
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.695
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.693
Pm018314 Prunus mume Pm018314 I 0.693
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.693
Si030983m.g Setaria italica Si030983m.g I 0.692
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.692
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.692
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.692
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.692
MDP0000316497 Malus domestica MDP0000316497 I 0.692
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.676
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.676
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.676
Bo8g097390 Brassica oleracea Bo8g097390 I 0.676
Bra007637 Brassica rapa Bra007637 I 0.676
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.676
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.676
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.674
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.674
MDP0000311522 Malus domestica MDP0000311522 I 0.660
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.655
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.643
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.638
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.634
Bo3g002560 Brassica oleracea Bo3g002560 I 0.631
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.625
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.623
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.623
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.623
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.622
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.622
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.622
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.621
Bo2g005230 Brassica oleracea Bo2g005230 I 0.619
Bra028820 Brassica rapa Bra028820 I 0.619
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.618
MDP0000737128 Malus domestica MDP0000737128 I 0.618
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.618
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.618
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.618
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.618
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.618
MDP0000124827 Malus domestica MDP0000124827 I 0.618
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.618
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.618
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.618
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.618
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.618
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.618
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.618
29822.m003500 Ricinus communis 29822.m003500 I 0.618
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.618
TCM_018470 Theobroma cacao TCM_018470 I 0.618
PK20392.1 Cannabis sativa PK20392.1 D 0.618
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.618
Ca_10527 Cicer arietinum Ca_10527 I 0.618
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.618
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.618
Pm015861 Prunus mume Pm015861 I 0.618
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.618
Cla010510 Citrullus lanatus Cla010510 I 0.618
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.617
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.617
Bra006285 Brassica rapa Bra006285 I 0.616
Bo3g010120 Brassica oleracea Bo3g010120 I 0.616
HAT7 Arabidopsis thaliana AT5G15150 I 0.616
Bo2g012410 Brassica oleracea Bo2g012410 I 0.616
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.616
Bo9g165360 Brassica oleracea Bo9g165360 I 0.616
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.616
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.616
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.616
Bra008717 Brassica rapa Bra008717 I 0.616
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.616
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.616
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.616
Bra023506 Brassica rapa Bra023506 I 0.616
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.616
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.615
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.612
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.611
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.610
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.610
mgf022748m Mimulus guttatus mgf022748m I 0.610
mgf019824m Mimulus guttatus mgf019824m I 0.608
Cla018017 Citrullus lanatus Cla018017 I 0.608
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.608
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.606
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.605
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.600
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.600
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.600