Bo2g005230 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo2g005230 T204864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.818 0.893
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.818 0.893
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.818 0.893
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.767 0.679
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.711 0.571
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.711 0.571
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.691 0.571
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.691 0.571
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g005230.1 Homeodomain 77 132

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra028820 Brassica rapa Bra028820 I 0.867
Bo3g002560 Brassica oleracea Bo3g002560 I 0.850
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.818
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.818
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.818
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.818
Bra009510 Brassica rapa Bra009510 I 0.818
Bo9g181720 Brassica oleracea Bo9g181720 I 0.818
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.818
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.818
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.807
Cla018017 Citrullus lanatus Cla018017 I 0.807
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.805
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.805
mgf019824m Mimulus guttatus mgf019824m I 0.795
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.783
PK15535.1 Cannabis sativa PK15535.1 I 0.783
mgf022748m Mimulus guttatus mgf022748m I 0.779
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.775
29815.m000499 Ricinus communis 29815.m000499 I 0.775
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.775
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.775
MDP0000119544 Malus domestica MDP0000119544 I 0.774
MDP0000738604 Malus domestica MDP0000738604 I 0.774
MDP0000134241 Malus domestica MDP0000134241 I 0.774
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.771
TCM_022391 Theobroma cacao TCM_022391 I 0.771
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.771
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.771
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.771
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.771
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.771
Pm026270 Prunus mume Pm026270 I 0.771
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.770
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.767
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.764
Bra005259 Brassica rapa Bra005259 I 0.764
Bo4g034490 Brassica oleracea Bo4g034490 I 0.764
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.762
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.754
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.753
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.753
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.751
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.749
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.748
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.744
Cla018641 Citrullus lanatus Cla018641 I 0.744
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.743
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.743
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.740
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.740
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.740
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.740
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.726
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.723
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.721
Ca_10527 Cicer arietinum Ca_10527 I 0.711
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.711
Cla010510 Citrullus lanatus Cla010510 I 0.711
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.711
MDP0000737128 Malus domestica MDP0000737128 I 0.711
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.711
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.711
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.711
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.711
PK20392.1 Cannabis sativa PK20392.1 D 0.711
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.711
Pm015861 Prunus mume Pm015861 I 0.711
MDP0000124827 Malus domestica MDP0000124827 I 0.711
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.711
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.711
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.711
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.711
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.711
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.711
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.711
29822.m003500 Ricinus communis 29822.m003500 I 0.711
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.711
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.711
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.711
TCM_018470 Theobroma cacao TCM_018470 I 0.711
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.711
Bra023506 Brassica rapa Bra023506 I 0.711
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.711
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.711
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.711
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.711
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.711
Bra006285 Brassica rapa Bra006285 I 0.711
Bra008717 Brassica rapa Bra008717 I 0.711
Bo9g165360 Brassica oleracea Bo9g165360 I 0.711
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.711
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.711
HAT7 Arabidopsis thaliana AT5G15150 I 0.711
Bo2g012410 Brassica oleracea Bo2g012410 I 0.711
Bo3g010120 Brassica oleracea Bo3g010120 I 0.711
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.706
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.705
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.705
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.703
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.703
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.693
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.692
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.692
Bo1g158730 Brassica oleracea Bo1g158730 I 0.691
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.691
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.691
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.691
Bra039135 Brassica rapa Bra039135 I 0.691
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.691
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.691
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.691
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.690
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.690
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.689
Bo12274s010 Brassica oleracea Bo12274s010 I 0.687
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.683
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.683
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.682
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.678
Ca_20151 Cicer arietinum Ca_20151 I 0.677
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.669
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
29983.m003123 Ricinus communis 29983.m003123 I 0.665
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.665
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
Si030983m.g Setaria italica Si030983m.g I 0.661
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.661
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.661
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.661
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.661
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.661
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.658
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.656
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.656
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.655
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.655
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.654
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.654
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.654
Pm018314 Prunus mume Pm018314 I 0.654
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.652
Bra022687 Brassica rapa Bra022687 I 0.652
Bo2g042250 Brassica oleracea Bo2g042250 I 0.652
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.652
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.652
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.652
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.650
Ca_00750 Cicer arietinum Ca_00750 I 0.650
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.647
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.640
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.639
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I 0.638
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.635
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.635
Bo4g100070 Brassica oleracea Bo4g100070 I 0.634
AT1G27045 Arabidopsis thaliana AT1G27045 I 0.632
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.630
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.628
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.627
Pm011328 Prunus mume Pm011328 I 0.626
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.626
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.626
TCM_031644 Theobroma cacao TCM_031644 I 0.626
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.626
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.626
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.626
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.626
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.626
mgf013301m Mimulus guttatus mgf013301m I 0.626
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.626
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
MDP0000146339 Malus domestica MDP0000146339 I 0.624
MDP0000909160 Malus domestica MDP0000909160 I 0.624
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.623
MDP0000311522 Malus domestica MDP0000311522 I 0.621
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I 0.619
Bra014417 Brassica rapa Bra014417 I 0.619
GSMUA_Achr9G14960_001 Musa acuminata GSMUA_Achr9G14960_001 I 0.619
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.616
ATHB-23 Arabidopsis thaliana AT1G26960 I 0.611
AC233899.1_FG004 Zea mays AC233899.1_FG004 I 0.611
Bra018155 Brassica rapa Bra018155 I 0.611
Bra016300 Brassica rapa Bra016300 I 0.611
AtHB23 Arabidopsis lyrata fgenesh2_kg.1__2657__AT1G26960.1 I 0.611
Thhalv10008487m.g Eutrema salsugineum Thhalv10008487m.g I 0.611
Cagra.1150s0002 Capsella grandiflora Cagra.1150s0002 I 0.611
Carubv10010076m.g Capsella rubella Carubv10010076m.g I 0.611
Bo8g076330 Brassica oleracea Bo8g076330 I 0.611
Bostr.12659s0299 Boechera stricta Bostr.12659s0299 I 0.611
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.607
Bo9g181710 Brassica oleracea Bo9g181710 I 0.607
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.607
GRMZM2G056600 Zea mays GRMZM2G056600 I 0.606
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.605
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.605
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.603
HOX4 Oryza indica BGIOSGA030941 I 0.602
HOX20 Oryza indica BGIOSGA026788 I 0.602
Pavir.J20523 Panicum virgatum Pavir.J20523 I 0.602
Pavir.J27155 Panicum virgatum Pavir.J27155 I 0.602
Pavir.J41033 Panicum virgatum Pavir.J41033 I 0.602
HOX20 Oryza sativa OS08G0481400 I 0.602
ORUFI09G14530 Oryza rufipogon ORUFI09G14530 I 0.602
ORGLA08G0159100 Oryza glaberrima ORGLA08G0159100 I 0.602
ORGLA09G0102600 Oryza glaberrima ORGLA09G0102600 I 0.602
Pavir.Fa00633 Panicum virgatum Pavir.Fa00633 I 0.602
OPUNC08G16250 Oryza punctata OPUNC08G16250 I 0.602
HOX4 Oryza sativa OS09G0470500 I 0.602
ONIVA09G13990 Oryza nivara ONIVA09G13990 I 0.602
LPERR08G15240 Leersia perrieri LPERR08G15240 I 0.602
LPERR09G09790 Leersia perrieri LPERR09G09790 I 0.602
GSMUA_Achr7G11760_001 Musa acuminata GSMUA_Achr7G11760_001 I 0.602
Si030822m.g Setaria italica Si030822m.g I 0.602
Si014231m.g Setaria italica Si014231m.g I 0.602
OB08G25440 Oryza brachyantha OB08G25440 I 0.602
OB09G20040 Oryza brachyantha OB09G20040 I 0.602
OGLUM09G14010 Oryza glumaepatula OGLUM09G14010 I 0.602
OGLUM08G19260 Oryza glumaepatula OGLUM08G19260 I 0.602
Traes_5BL_5DE02D63E Triticum aestivum Traes_5BL_5DE02D63E I 0.602
OBART08G18330 Oryza barthii OBART08G18330 I 0.602
GSMUA_Achr2G14750_001 Musa acuminata GSMUA_Achr2G14750_001 I 0.602
GSMUA_Achr3G06620_001 Musa acuminata GSMUA_Achr3G06620_001 I 0.602
OPUNC09G11870 Oryza punctata OPUNC09G11870 I 0.602
ONIVA08G20420 Oryza nivara ONIVA08G20420 I 0.602
Sb02g027300 Sorghum bicolor Sb02g027300 I 0.602
GRMZM2G041127 Zea mays GRMZM2G041127 I 0.602
BRADI4G32737 Brachypodium distachyon BRADI4G32737 I 0.602
OLONG_010656 Oryza longistaminata OLONG_010656 I 0.602
OMERI08G14350 Oryza meridionalis OMERI08G14350 I 0.602
Bra024665 Brassica rapa Bra024665 I 0.601
Bo5g041500 Brassica oleracea Bo5g041500 I 0.601
AMTR_s00059p00141510 Amborella trichopoda AMTR_s00059p00141510 I 0.600
TCM_000438 Theobroma cacao TCM_000438 I 0.599
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.599
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.599
MDP0000789571 Malus domestica MDP0000789571 I 0.599
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.599
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.599