Bo4g034490 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo4g034490 T204914_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.794 0.842
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.748 0.719
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.748 0.719
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.748 0.719
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.677 0.632
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.677 0.632
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.657 0.614
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.657 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g034490.1 Homeodomain 70 126

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra005259 Brassica rapa Bra005259 I 0.867
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.811
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.794
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.794
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.794
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.794
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.793
Bo3g002560 Brassica oleracea Bo3g002560 I 0.776
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.775
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.775
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.773
Bra028820 Brassica rapa Bra028820 I 0.764
Bo2g005230 Brassica oleracea Bo2g005230 I 0.764
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.761
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.761
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.761
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.761
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.760
Pm026270 Prunus mume Pm026270 I 0.757
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.757
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.757
TCM_022391 Theobroma cacao TCM_022391 I 0.757
Cla018641 Citrullus lanatus Cla018641 I 0.757
Cla018017 Citrullus lanatus Cla018017 I 0.757
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.757
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.757
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.757
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.757
29815.m000499 Ricinus communis 29815.m000499 I 0.757
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.757
MDP0000134241 Malus domestica MDP0000134241 I 0.756
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.756
MDP0000119544 Malus domestica MDP0000119544 I 0.756
MDP0000738604 Malus domestica MDP0000738604 I 0.756
mgf022748m Mimulus guttatus mgf022748m I 0.756
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.756
mgf019824m Mimulus guttatus mgf019824m I 0.753
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.753
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.749
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.748
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.748
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.748
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.748
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.748
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.748
Bra009510 Brassica rapa Bra009510 I 0.748
Bo9g181720 Brassica oleracea Bo9g181720 I 0.748
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.748
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.748
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.748
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.748
PK15535.1 Cannabis sativa PK15535.1 I 0.745
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.745
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.741
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.719
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.705
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.699
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.695
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.685
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.679
Ca_20151 Cicer arietinum Ca_20151 I 0.677
Ca_10527 Cicer arietinum Ca_10527 I 0.677
29822.m003500 Ricinus communis 29822.m003500 I 0.677
Cla010510 Citrullus lanatus Cla010510 I 0.677
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.677
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.677
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.677
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.677
PK20392.1 Cannabis sativa PK20392.1 D 0.677
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.677
MDP0000737128 Malus domestica MDP0000737128 I 0.677
MDP0000124827 Malus domestica MDP0000124827 I 0.677
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.677
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.677
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.677
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.677
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.677
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.677
Pm015861 Prunus mume Pm015861 I 0.677
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.677
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.677
TCM_018470 Theobroma cacao TCM_018470 I 0.677
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.677
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.677
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.677
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.677
Bra023506 Brassica rapa Bra023506 I 0.676
Bra008717 Brassica rapa Bra008717 I 0.676
Bra006285 Brassica rapa Bra006285 I 0.676
Bo9g165360 Brassica oleracea Bo9g165360 I 0.676
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.676
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.676
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.676
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.676
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.676
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.676
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.676
Bo3g010120 Brassica oleracea Bo3g010120 I 0.676
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.676
HAT7 Arabidopsis thaliana AT5G15150 I 0.676
Bo2g012410 Brassica oleracea Bo2g012410 I 0.676
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.674
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.674
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.674
Si030983m.g Setaria italica Si030983m.g I 0.671
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.671
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.671
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.671
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.671
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.671
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.671
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.670
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.669
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.664
Pm018314 Prunus mume Pm018314 I 0.663
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.663
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.663
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.661
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.659
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.659
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.657
Bra039135 Brassica rapa Bra039135 I 0.657
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.657
Bo1g158730 Brassica oleracea Bo1g158730 I 0.657
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.657
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.657
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.657
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.657
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.657
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.655
Bo12274s010 Brassica oleracea Bo12274s010 I 0.652
29983.m003123 Ricinus communis 29983.m003123 I 0.652
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.648
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.648
Bo2g042250 Brassica oleracea Bo2g042250 I 0.648
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.648
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.648
Bra022687 Brassica rapa Bra022687 I 0.648
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.648
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.648
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.648
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.647
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.645
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.645
mgf013301m Mimulus guttatus mgf013301m I 0.645
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.644
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.643
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.640
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.640
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.640
Ca_00750 Cicer arietinum Ca_00750 I 0.640
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.639
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.638
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.636
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.634
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.634
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.633
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.633
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.633
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.633
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.633
MDP0000311522 Malus domestica MDP0000311522 I 0.630
Bo5g041500 Brassica oleracea Bo5g041500 I 0.628
AT1G27045 Arabidopsis thaliana AT1G27045 I 0.628
Bra024665 Brassica rapa Bra024665 I 0.628
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.627
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.627
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I 0.625
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.624
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.623
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.623
Pm011328 Prunus mume Pm011328 I 0.623
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.623
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.623
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.623
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.623
TCM_031644 Theobroma cacao TCM_031644 I 0.623
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.623
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.623
MDP0000909160 Malus domestica MDP0000909160 I 0.622
MDP0000146339 Malus domestica MDP0000146339 I 0.622
Bo9g181710 Brassica oleracea Bo9g181710 I 0.620
Bo4g100070 Brassica oleracea Bo4g100070 I 0.612
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.610
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.610
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I 0.607
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.603
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.601