Lus10008641.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10008641.g T228847_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.787 0.807
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.787 0.807
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.787 0.807
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.753 0.702
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.689 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.689 0.614
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.669 0.596
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.669 0.596
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10008641 Homeodomain 87 143

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.867
Cla018641 Citrullus lanatus Cla018641 I 0.836
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.804
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.802
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.802
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.801
29815.m000499 Ricinus communis 29815.m000499 I 0.799
Cla018017 Citrullus lanatus Cla018017 I 0.799
Pm026270 Prunus mume Pm026270 I 0.799
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.799
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.799
MDP0000738604 Malus domestica MDP0000738604 I 0.798
MDP0000119544 Malus domestica MDP0000119544 I 0.798
MDP0000134241 Malus domestica MDP0000134241 I 0.798
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.797
TCM_022391 Theobroma cacao TCM_022391 I 0.797
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.797
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.797
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.797
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.797
mgf019824m Mimulus guttatus mgf019824m I 0.794
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.792
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.787
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.787
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.787
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.787
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.787
PK15535.1 Cannabis sativa PK15535.1 I 0.787
Bra009510 Brassica rapa Bra009510 I 0.787
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.787
Bo9g181720 Brassica oleracea Bo9g181720 I 0.787
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.787
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.784
Bo3g002560 Brassica oleracea Bo3g002560 I 0.783
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.779
mgf022748m Mimulus guttatus mgf022748m I 0.775
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.771
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.771
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.771
Bra028820 Brassica rapa Bra028820 I 0.771
Bo2g005230 Brassica oleracea Bo2g005230 I 0.771
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.767
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.767
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.765
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.765
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.762
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.762
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.762
Bo4g034490 Brassica oleracea Bo4g034490 I 0.761
Bra005259 Brassica rapa Bra005259 I 0.761
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.759
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.753
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.748
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.742
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.722
Si030983m.g Setaria italica Si030983m.g I 0.714
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.714
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.714
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.714
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.714
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.714
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.714
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.713
Ca_20151 Cicer arietinum Ca_20151 I 0.696
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.696
MDP0000124827 Malus domestica MDP0000124827 I 0.689
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.689
Bra006285 Brassica rapa Bra006285 I 0.689
Cla010510 Citrullus lanatus Cla010510 I 0.689
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.689
Ca_10527 Cicer arietinum Ca_10527 I 0.689
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.689
MDP0000737128 Malus domestica MDP0000737128 I 0.689
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.689
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.689
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.689
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.689
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.689
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.689
HAT7 Arabidopsis thaliana AT5G15150 I 0.689
Bo3g010120 Brassica oleracea Bo3g010120 I 0.689
29822.m003500 Ricinus communis 29822.m003500 I 0.689
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.689
Bo2g012410 Brassica oleracea Bo2g012410 I 0.689
Pm015861 Prunus mume Pm015861 I 0.689
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.689
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.689
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.689
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.689
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.689
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.689
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.689
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.689
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.689
Bra023506 Brassica rapa Bra023506 I 0.689
Bra008717 Brassica rapa Bra008717 I 0.689
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.689
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.689
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.689
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.689
PK20392.1 Cannabis sativa PK20392.1 D 0.689
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.689
Bo9g165360 Brassica oleracea Bo9g165360 I 0.689
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.689
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.689
TCM_018470 Theobroma cacao TCM_018470 I 0.689
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.683
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.682
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.682
Ca_00750 Cicer arietinum Ca_00750 I 0.682
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.681
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.679
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.677
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.676
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.676
Pm018314 Prunus mume Pm018314 I 0.676
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.676
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.674
MDP0000311522 Malus domestica MDP0000311522 I 0.674
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.672
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.670
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.670
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.669
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.669
Bo1g158730 Brassica oleracea Bo1g158730 I 0.669
Bra039135 Brassica rapa Bra039135 I 0.669
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.669
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.669
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.669
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.669
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.668
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.665
Bo12274s010 Brassica oleracea Bo12274s010 I 0.665
29983.m003123 Ricinus communis 29983.m003123 I 0.665
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.661
Bra022687 Brassica rapa Bra022687 I 0.661
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.661
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.661
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.661
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.661
Bo2g042250 Brassica oleracea Bo2g042250 I 0.661
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.661
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.659
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.658
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.658
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.656
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.656
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.656
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.653
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.652
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.647
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.638
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.635
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.635
Pm011328 Prunus mume Pm011328 I 0.635
TCM_031644 Theobroma cacao TCM_031644 I 0.635
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.635
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.635
mgf013301m Mimulus guttatus mgf013301m I 0.635
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.635
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.635
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.635
MDP0000909160 Malus domestica MDP0000909160 I 0.634
MDP0000146339 Malus domestica MDP0000146339 I 0.634
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.628
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.627
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.623
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.623
mgf025174m Mimulus guttatus mgf025174m I 0.620
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.616
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.615
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.615
PGSC0003DMG400016148 Solanum tuberosum PGSC0003DMG400016148 I 0.613
MTR_8g089895 Medicago truncatula MTR_8g089895 I 0.613
GSMUA_Achr6G10310_001 Musa acuminata GSMUA_Achr6G10310_001 I 0.613
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.613
Solyc11g010270.1 Solanum lycopersicum Solyc11g010270.1 I 0.613
Bo9g181710 Brassica oleracea Bo9g181710 I 0.612
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
M408DRAFT_332781 Serendipita vermifera M408DRAFT_332781 I 0.604
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.601