Bra005259 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra005259 T205045_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.794 0.860
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.748 0.737
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.748 0.737
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.748 0.737
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.677 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.677 0.614
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.657 0.596
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.657 0.596
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005259.1-P Homeodomain 72 128

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g034490 Brassica oleracea Bo4g034490 I 0.867
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.811
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.794
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.794
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.794
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.794
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.793
Bo3g002560 Brassica oleracea Bo3g002560 I 0.776
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.775
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.775
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.773
Bo2g005230 Brassica oleracea Bo2g005230 I 0.764
Bra028820 Brassica rapa Bra028820 I 0.764
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.761
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.761
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.761
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.761
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.760
29815.m000499 Ricinus communis 29815.m000499 I 0.757
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.757
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.757
Cla018641 Citrullus lanatus Cla018641 I 0.757
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.757
TCM_022391 Theobroma cacao TCM_022391 I 0.757
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.757
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.757
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.757
Pm026270 Prunus mume Pm026270 I 0.757
Cla018017 Citrullus lanatus Cla018017 I 0.757
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.757
MDP0000134241 Malus domestica MDP0000134241 I 0.756
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.756
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.756
mgf022748m Mimulus guttatus mgf022748m I 0.756
MDP0000738604 Malus domestica MDP0000738604 I 0.756
MDP0000119544 Malus domestica MDP0000119544 I 0.756
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.753
mgf019824m Mimulus guttatus mgf019824m I 0.753
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.749
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.748
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.748
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.748
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.748
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.748
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.748
Bra009510 Brassica rapa Bra009510 I 0.748
Bo9g181720 Brassica oleracea Bo9g181720 I 0.748
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.748
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.748
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.748
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.748
PK15535.1 Cannabis sativa PK15535.1 I 0.745
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.745
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.741
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.719
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.705
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.699
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.695
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.685
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.679
Ca_20151 Cicer arietinum Ca_20151 I 0.677
Ca_10527 Cicer arietinum Ca_10527 I 0.677
29822.m003500 Ricinus communis 29822.m003500 I 0.677
Cla010510 Citrullus lanatus Cla010510 I 0.677
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.677
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.677
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.677
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.677
PK20392.1 Cannabis sativa PK20392.1 D 0.677
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.677
MDP0000737128 Malus domestica MDP0000737128 I 0.677
MDP0000124827 Malus domestica MDP0000124827 I 0.677
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.677
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.677
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.677
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.677
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.677
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.677
Pm015861 Prunus mume Pm015861 I 0.677
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.677
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.677
TCM_018470 Theobroma cacao TCM_018470 I 0.677
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.677
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.677
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.677
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.677
Bra023506 Brassica rapa Bra023506 I 0.676
Bra008717 Brassica rapa Bra008717 I 0.676
Bra006285 Brassica rapa Bra006285 I 0.676
Bo9g165360 Brassica oleracea Bo9g165360 I 0.676
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.676
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.676
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.676
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.676
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.676
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.676
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.676
Bo3g010120 Brassica oleracea Bo3g010120 I 0.676
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.676
HAT7 Arabidopsis thaliana AT5G15150 I 0.676
Bo2g012410 Brassica oleracea Bo2g012410 I 0.676
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.674
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.674
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.674
Si030983m.g Setaria italica Si030983m.g I 0.671
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.671
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.671
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.671
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.671
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.671
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.671
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.670
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.669
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.664
Pm018314 Prunus mume Pm018314 I 0.663
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.663
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.663
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.661
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.659
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.659
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.657
Bra039135 Brassica rapa Bra039135 I 0.657
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.657
Bo1g158730 Brassica oleracea Bo1g158730 I 0.657
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.657
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.657
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.657
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.657
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.657
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.655
Bo12274s010 Brassica oleracea Bo12274s010 I 0.652
29983.m003123 Ricinus communis 29983.m003123 I 0.652
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.648
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.648
Bo2g042250 Brassica oleracea Bo2g042250 I 0.648
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.648
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.648
Bra022687 Brassica rapa Bra022687 I 0.648
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.648
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.648
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.648
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.647
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.645
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.645
mgf013301m Mimulus guttatus mgf013301m I 0.645
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.644
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.643
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.640
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.640
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.640
Ca_00750 Cicer arietinum Ca_00750 I 0.640
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.639
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.638
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.636
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.634
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.634
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.633
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.633
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.633
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.633
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.633
MDP0000311522 Malus domestica MDP0000311522 I 0.630
Bo5g041500 Brassica oleracea Bo5g041500 I 0.628
AT1G27045 Arabidopsis thaliana AT1G27045 I 0.628
Bra024665 Brassica rapa Bra024665 I 0.628
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.627
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.627
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I 0.625
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.624
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.623
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.623
Pm011328 Prunus mume Pm011328 I 0.623
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.623
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.623
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.623
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.623
TCM_031644 Theobroma cacao TCM_031644 I 0.623
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.623
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.623
MDP0000909160 Malus domestica MDP0000909160 I 0.622
MDP0000146339 Malus domestica MDP0000146339 I 0.622
Bo9g181710 Brassica oleracea Bo9g181710 I 0.620
Bo4g100070 Brassica oleracea Bo4g100070 I 0.612
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.610
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.610
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I 0.607
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.603
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.601