MTR_8g026960 (Medicago truncatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MTR_8g026960 T220860_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.697 0.702
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.683 0.807
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.683 0.807
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.601 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.601 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AET01987 Homeodomain 32 88

Links

Other Homeodomain family TFs
Other Medicago truncatula TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_17608 Cicer arietinum Ca_17608 I 0.867
MDP0000316497 Malus domestica MDP0000316497 I 0.770
Pm018314 Prunus mume Pm018314 I 0.740
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.740
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.739
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.739
Si030983m.g Setaria italica Si030983m.g I 0.739
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.739
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.739
Bo4g100070 Brassica oleracea Bo4g100070 I 0.710
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.710
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.707
MDP0000311522 Malus domestica MDP0000311522 I 0.706
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.702
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.697
Bra014417 Brassica rapa Bra014417 I 0.695
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.693
GLYMA07G05800 Glycine max GLYMA07G05800 I 0.686
Bo8g097390 Brassica oleracea Bo8g097390 I 0.683
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.683
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.683
Bra007637 Brassica rapa Bra007637 I 0.683
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.683
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.683
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.683
MDP0000899816 Malus domestica MDP0000899816 I 0.669
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.669
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.661
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.661
GLYMA16G02390 Glycine max GLYMA16G02390 I 0.660
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.646
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I 0.639
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I 0.639
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I 0.639
27964.m000347 Ricinus communis 27964.m000347 I 0.639
MDP0000615948 Malus domestica MDP0000615948 I 0.637
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.636
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I 0.634
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.634
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I 0.631
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I 0.630
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.630
TCM_005074 Theobroma cacao TCM_005074 I 0.630
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.626
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.623
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.619
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.619
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.619
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.616
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.615
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.615
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.614
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.614
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.614
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.613
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.612
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.612
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.612
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.609
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.609
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.609
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.608
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I 0.607
Carubv10023896m.g Capsella rubella Carubv10023896m.g I 0.607
Cagra.0050s0032 Capsella grandiflora Cagra.0050s0032 I 0.607
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.606
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I 0.606
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.606
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I 0.606
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.603
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.602
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.602
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.602
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I 0.601
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.601
PK20392.1 Cannabis sativa PK20392.1 D 0.601
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.601
MDP0000124827 Malus domestica MDP0000124827 I 0.601
MDP0000737128 Malus domestica MDP0000737128 I 0.601
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.601
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.601
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.601
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.601
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.601
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.601
29822.m003500 Ricinus communis 29822.m003500 I 0.601
TCM_018470 Theobroma cacao TCM_018470 I 0.601
Ca_10527 Cicer arietinum Ca_10527 I 0.601
Cla010510 Citrullus lanatus Cla010510 I 0.601
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.601
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.601
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.601
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.601
Pm015861 Prunus mume Pm015861 I 0.601
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.601
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.601
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.601
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.601
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.601
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.601
Bra006285 Brassica rapa Bra006285 I 0.600
Bra008717 Brassica rapa Bra008717 I 0.600
Bo9g165360 Brassica oleracea Bo9g165360 I 0.600
Bo3g010120 Brassica oleracea Bo3g010120 I 0.600
HAT7 Arabidopsis thaliana AT5G15150 I 0.600
Bo2g012410 Brassica oleracea Bo2g012410 I 0.600
Bra023506 Brassica rapa Bra023506 I 0.600
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.600
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.600
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.600
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.600
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.600
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.600
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.600
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.600
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.600
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.599