Lus10015325.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10015325.g T228867_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.832 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10015325 Homeodomain 33 89

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.867
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.842
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.842
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.839
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.838
Cla009803 Citrullus lanatus Cla009803 I 0.838
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.838
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.838
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.838
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.838
MDP0000192108 Malus domestica MDP0000192108 I 0.838
Pm010098 Prunus mume Pm010098 I 0.838
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.838
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.838
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.838
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.837
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.837
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.837
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.837
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.837
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.836
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.836
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.836
Bra032908 Brassica rapa Bra032908 I 0.835
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.834
Bo5g055970 Brassica oleracea Bo5g055970 I 0.834
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.833
Ca_06343 Cicer arietinum Ca_06343 I 0.833
Ca_00337 Cicer arietinum Ca_00337 I 0.833
RLT1 Arabidopsis thaliana AT1G28420 D 0.832
PK13272.1 Cannabis sativa PK13272.1 I 0.831
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.831
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.827
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.827
MDP0000288192 Malus domestica MDP0000288192 I 0.826
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.822
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.822
TCM_029805 Theobroma cacao TCM_029805 I 0.822
Bo3g143570 Brassica oleracea Bo3g143570 I 0.802
mgf006858m Mimulus guttatus mgf006858m I 0.802
Bra010869 Brassica rapa Bra010869 I 0.802
30190.m011307 Ricinus communis 30190.m011307 I 0.792
mgf006635m Mimulus guttatus mgf006635m I 0.783
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.753
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.695
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.667
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.663
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.662
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.662
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.662
OBART05G25730 Oryza barthii OBART05G25730 I 0.662
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.662
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.662
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.662
PK06068.1 Cannabis sativa PK06068.1 I 0.658
Ca_11272 Cicer arietinum Ca_11272 I 0.658
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.657
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.657
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.656
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.656
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.656
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.656
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.656
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.656
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.656
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.656
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.655
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.655
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.655
29983.m003128 Ricinus communis 29983.m003128 I 0.655
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.651
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.651
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.651
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.651
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.647
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.646
TCM_008214 Theobroma cacao TCM_008214 I 0.646
Bo7g067190 Brassica oleracea Bo7g067190 I 0.644
Bra033725 Brassica rapa Bra033725 I 0.643
RLT2 Arabidopsis thaliana AT5G44180 I 0.641
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.629
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.629
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.629
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.629
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.629
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.629
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.629
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.629
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.629
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.629
OS01G0672201 Oryza sativa OS01G0672201 I 0.629
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.629
OB01G35240 Oryza brachyantha OB01G35240 I 0.629
Si004333m.g Setaria italica Si004333m.g I 0.629
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.629
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.629
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.624
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.624
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.623
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.623
F775_01844 Aegilops tauschii F775_01844 I 0.623
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.619
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.619
Si020949m.g Setaria italica Si020949m.g I 0.619
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.617
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.617
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.616
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.616
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.615
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.615
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.609