POPTR_0001s08350 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0001s08350 T249656_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.898 0.653
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.898 0.653
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s08350.1 MADF 39 119

Links

Other MADF family TFs
Other Populus trichocarpa TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.969
Ca_00394 Cicer arietinum Ca_00394 I 0.969
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.969
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.969
TCM_029695 Theobroma cacao TCM_029695 I 0.969
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.960
PK27986.1 Cannabis sativa PK27986.1 I 0.960
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.959
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.957
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.954
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.954
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.954
MDP0000301451 Malus domestica MDP0000301451 I 0.953
Cla009854 Citrullus lanatus Cla009854 I 0.952
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.948
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.947
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.947
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.935
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.935
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.931
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.912
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.908
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.906
29900.m001628 Ricinus communis 29900.m001628 I 0.906
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.904
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.904
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.898
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.898
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.898
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.898
Bo6g075950 Brassica oleracea Bo6g075950 I 0.897
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.897
Bra003346 Brassica rapa Bra003346 I 0.897
Ca_19877 Cicer arietinum Ca_19877 I 0.892
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.891
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.889
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.888
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.887
Cla019967 Citrullus lanatus Cla019967 I 0.879
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.879
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.879
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.873
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.869
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.869
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.869
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.869
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.869
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.862
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.861
Bra007407 Brassica rapa Bra007407 I 0.852
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.849
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.848
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.847
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.843
Cla002288 Citrullus lanatus Cla002288 I 0.834
mgf001239m Mimulus guttatus mgf001239m N 0.834
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.825
OBART05G25610 Oryza barthii OBART05G25610 I 0.823
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.823
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.823
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.823
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.823
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.823
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.823
OS05G0560600 Oryza sativa OS05G0560600 I 0.823
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.823
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.817