mbd3b (Danio rerio)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 ENSDARG00000042029 T260103_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MBD2
M09256_2.00 		Homo sapiens
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_HUMAN.H11MO.0.B 		0.717 0.717
Mbd2
M09258_2.00 		Mus musculus
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_MOUSE.H11MO.0.B 		0.779 0.779
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000048774 MBD 4 48
ENSDARP00000048774 MBD 40 114
ENSDARP00000131120 MBD 12 63
ENSDARP00000131120 MBD 70 137

Links

Other MBD family TFs
Other Danio rerio TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000017952 Astyanax mexicanus ENSAMXG00000017952 I 0.974
MBD3 Gasterosteus aculeatus ENSGACG00000012755 I 0.920
ENSPANG00000015324 Papio anubis ENSPANG00000015324 N 0.896
MBD3 Homo sapiens ENSG00000071655 N 0.896
mbd3a Danio rerio ENSDARG00000061774 I 0.896
Mbd3 Mus musculus ENSMUSG00000035478 N 0.883
Mbd3 Rattus norvegicus ENSRNOG00000028956 N 0.883
MBD3 Tetraodon nigroviridis ENSTNIG00000010627 N 0.883
ENSSHAG00000013346 Sarcophilus harrisii ENSSHAG00000013346 N 0.883
Tal_R008196 Tyto alba Tal_R008196 N 0.870
Afo_R010057 Aptenodytes forsteri Afo_R010057 N 0.870
Brh_R003386 Buceros rhinoceros Brh_R003386 N 0.870
ENSOARG00000012359 Ovis aries ENSOARG00000012359 I 0.861
ENSAMEG00000003491 Ailuropoda melanoleuca ENSAMEG00000003491 I 0.859
ENSGMOG00000008953 Gadus morhua ENSGMOG00000008953 I 0.835
ENSXMAG00000012716 Xiphophorus maculatus ENSXMAG00000012716 I 0.833
MBD3 Felis catus ENSFCAG00000000763 I 0.827
ENSLOCG00000006043 Lepisosteus oculatus ENSLOCG00000006043 N 0.811
Pvit_04402 Pogona vitticeps Pvit_04402 I 0.805
mbd3.S Xenopus laevis XB-GENE-491557 I 0.804
ENSPPYG00000009325 Pongo abelii ENSPPYG00000009325 I 0.802
MBD3 Equus caballus ENSECAG00000015485 I 0.798
ENSFCAG00000022047 Felis catus ENSFCAG00000022047 I 0.792
ENSP00000156825 Macaca fascicularis ENSP00000156825 N 0.784
MBD3 Ochotona princeps ENSOPRG00000008719 I 0.776
MBD3 Canis familiaris ENSCAFG00000019503 N 0.764
MBD3 Meleagris gallopavo ENSMGAG00000002493 N 0.747
ENSMPUG00000008045 Mustela putorius furo ENSMPUG00000008045 N 0.742
Myotis_brandtii_MBD3_10015627 Myotis brandtii Myotis_brandtii_MBD3_10015627 N 0.736
Alligator_sinensis_CCG000430.1 Alligator sinensis Alligator_sinensis_CCG000430.1 N 0.722
ENSAPLG00000003384 Anas platyrhynchos ENSAPLG00000003384 N 0.719
ENSLACG00000016038 Latimeria chalumnae ENSLACG00000016038 I 0.717
ENSP00000256429-D1 Bos grunniens ENSP00000256429-D1 I 0.717
Gfo_R007597 Geospiza fortis Gfo_R007597 N 0.717
Aan_R011698 Calypte anna Aan_R011698 N 0.717
ENSTNIG00000003709 Tetraodon nigroviridis ENSTNIG00000003709 I 0.714