mbd3.S (Xenopus laevis)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 XB-GENE-491557 T261678_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MBD2
M09256_2.00 		Homo sapiens
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_HUMAN.H11MO.0.B 		0.731 0.731
Mbd2
M09258_2.00 		Mus musculus
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_MOUSE.H11MO.0.B 		0.725 0.725
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAD55389 MBD 1 71
AAD55389 MBD 76 145
AAD55390 MBD 1 92
AAD55390 MBD 97 166
AAH77740 MBD 1 91
AAH77740 MBD 96 165
BAC22082 MBD 1 72
BAC22082 MBD 77 146
BAC22083 MBD 1 91
BAC22083 MBD 96 165

Links

Other MBD family TFs
Other Xenopus laevis TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mbd3 Xenopus tropicalis XB-GENE-491553 I 0.992
ENSAMXG00000017952 Astyanax mexicanus ENSAMXG00000017952 I 0.922
ENSPPYG00000009325 Pongo abelii ENSPPYG00000009325 I 0.907
ENSOARG00000012359 Ovis aries ENSOARG00000012359 I 0.899
ENSAMEG00000003491 Ailuropoda melanoleuca ENSAMEG00000003491 I 0.897
mbd3a Danio rerio ENSDARG00000061774 I 0.896
MBD3 Gasterosteus aculeatus ENSGACG00000012755 I 0.893
MBD3 Equus caballus ENSECAG00000015485 I 0.893
ENSP00000156825 Macaca fascicularis ENSP00000156825 N 0.875
ENSGMOG00000008953 Gadus morhua ENSGMOG00000008953 I 0.871
MBD3 Ochotona princeps ENSOPRG00000008719 I 0.871
MBD3 Tursiops truncatus ENSTTRG00000004412 N 0.867
Mbd3 Mus musculus ENSMUSG00000035478 N 0.866
MBD3 Canis familiaris ENSCAFG00000019503 N 0.865
MBD3 Felis catus ENSFCAG00000000763 I 0.864
ENSXMAG00000012716 Xiphophorus maculatus ENSXMAG00000012716 I 0.857
MBD3 Pteropus vampyrus ENSPVAG00000017085 I 0.850
ENSMPUG00000008045 Mustela putorius furo ENSMPUG00000008045 N 0.843
MBD3 Tetraodon nigroviridis ENSTNIG00000010627 N 0.842
Myotis_brandtii_MBD3_10015627 Myotis brandtii Myotis_brandtii_MBD3_10015627 N 0.824
mbd3b Danio rerio ENSDARG00000042029 I 0.804
MBD2 Dasypus novemcinctus ENSDNOG00000033421 I 0.793
MBD2 Oryctolagus cuniculus ENSOCUG00000021080 I 0.793
ENSSTOG00000011253 Ictidomys tridecemlineatus ENSSTOG00000011253 I 0.793
ENSAMEG00000017208 Ailuropoda melanoleuca ENSAMEG00000017208 I 0.793
MBD2 Monodelphis domestica ENSMODG00000011041 I 0.793
Mbd2 Rattus norvegicus ENSRNOG00000011853 I 0.793
MBD2 Pan troglodytes ENSPTRG00000010033 I 0.793
ENSPANG00000021858 Papio anubis ENSPANG00000021858 I 0.793
MBD2 Loxodonta africana ENSLAFG00000014135 I 0.793
MBD2 Gorilla gorilla ENSGGOG00000013402 I 0.793
ENSMMUG00000003136 Macaca mulatta ENSMMUG00000003136 I 0.793
MBD2 Homo sapiens ENSG00000134046 D 0.793
MBD3 Meleagris gallopavo ENSMGAG00000002493 N 0.791
ENSLOCG00000006043 Lepisosteus oculatus ENSLOCG00000006043 N 0.789
mbd2.S Xenopus laevis XB-GENE-493780 I 0.789
MBD2 Sus scrofa ENSSSCG00000004528 I 0.786
mbd2 Danio rerio ENSDARG00000075952 I 0.784
Mbd2 Mus musculus ENSMUSG00000024513 D 0.784
MBD2 Otolemur garnettii ENSOGAG00000008028 I 0.784
Pvit_09821 Pogona vitticeps Pvit_09821 N 0.782
MBD2 Callithrix jacchus ENSCJAG00000001862 I 0.775
MBD2 Tupaia belangeri ENSTBEG00000015292 I 0.775
Gfo_R007597 Geospiza fortis Gfo_R007597 N 0.772
Aan_R011698 Calypte anna Aan_R011698 N 0.772
ENSTRUG00000006522 Takifugu rubripes ENSTRUG00000006522 I 0.761
ENSAPLG00000003384 Anas platyrhynchos ENSAPLG00000003384 N 0.760
ENSLACG00000016498 Latimeria chalumnae ENSLACG00000016498 N 0.757
ENSPFOG00000003939 Poecilia formosa ENSPFOG00000003939 I 0.744
ENSBTAP00000003926-D1 Bos grunniens ENSBTAP00000003926-D1 N 0.743
Alligator_sinensis_CCG000430.1 Alligator sinensis Alligator_sinensis_CCG000430.1 N 0.742
ENSXMAG00000003932 Xiphophorus maculatus ENSXMAG00000003932 I 0.740
MBD3 Dasypus novemcinctus ENSDNOG00000031786 N 0.735
MBD3 Monodelphis domestica ENSMODG00000004125 N 0.733
Ogr03458 Ophisaurus gracilis Ogr03458 I 0.731
ENSECAG00000022368 Equus caballus ENSECAG00000022368 I 0.731
ENSLOCG00000003370 Lepisosteus oculatus ENSLOCG00000003370 I 0.731
MBD2 Cavia porcellus ENSCPOG00000006832 I 0.731
MBD3 Ornithorhynchus anatinus ENSOANG00000003672 N 0.725
ENSGACG00000018294 Gasterosteus aculeatus ENSGACG00000018294 I 0.725
ENSMEUG00000003078 Macropus eugenii ENSMEUG00000003078 N 0.725
ENSACAG00000008739 Anolis carolinensis ENSACAG00000008739 I 0.723
ENSONIG00000012635 Oreochromis niloticus ENSONIG00000012635 I 0.723
ENSTNIG00000003709 Tetraodon nigroviridis ENSTNIG00000003709 I 0.717
ENSCSAG00000018106 Chlorocebus sabaeus ENSCSAG00000018106 I 0.714
MBD3 Sus scrofa ENSSSCG00000013435 N 0.712
ENSLACG00000016038 Latimeria chalumnae ENSLACG00000016038 I 0.708
ENSP00000256429-D1 Bos grunniens ENSP00000256429-D1 I 0.707