mbd3 (Xenopus tropicalis)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 XB-GENE-491553 T261677_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MBD2
M09256_2.00 		Homo sapiens
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_HUMAN.H11MO.0.B 		0.733 0.733
Mbd2
M09258_2.00 		Mus musculus
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_MOUSE.H11MO.0.B 		0.725 0.725
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH74695 MBD 1 92
AAH74695 MBD 97 166
CAJ82821 MBD 1 92
CAJ82821 MBD 97 166

Links

Other MBD family TFs
Other Xenopus tropicalis TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mbd3.S Xenopus laevis XB-GENE-491557 I 0.992
ENSAMEG00000003491 Ailuropoda melanoleuca ENSAMEG00000003491 I 0.897
ENSLACG00000016498 Latimeria chalumnae ENSLACG00000016498 N 0.892
Mbd3 Mus musculus ENSMUSG00000035478 N 0.883
MBD3 Tursiops truncatus ENSTTRG00000004412 N 0.875
Pvit_09821 Pogona vitticeps Pvit_09821 N 0.875
ENSXMAG00000012716 Xiphophorus maculatus ENSXMAG00000012716 I 0.857
ENSMPUG00000008045 Mustela putorius furo ENSMPUG00000008045 N 0.843
mbd3a Danio rerio ENSDARG00000061774 I 0.842
MBD3 Tetraodon nigroviridis ENSTNIG00000010627 N 0.833
MBD3 Pteropus vampyrus ENSPVAG00000017085 I 0.808
MBD2 Monodelphis domestica ENSMODG00000011041 I 0.793
ENSMMUG00000003136 Macaca mulatta ENSMMUG00000003136 I 0.793
ENSSTOG00000011253 Ictidomys tridecemlineatus ENSSTOG00000011253 I 0.793
MBD2 Pan troglodytes ENSPTRG00000010033 I 0.793
ENSPANG00000021858 Papio anubis ENSPANG00000021858 I 0.793
MBD2 Oryctolagus cuniculus ENSOCUG00000021080 I 0.793
MBD2 Homo sapiens ENSG00000134046 D 0.793
MBD2 Gorilla gorilla ENSGGOG00000013402 I 0.793
MBD2 Dasypus novemcinctus ENSDNOG00000033421 I 0.793
MBD2 Loxodonta africana ENSLAFG00000014135 I 0.793
ENSAMEG00000017208 Ailuropoda melanoleuca ENSAMEG00000017208 I 0.793
Aan_R011698 Calypte anna Aan_R011698 N 0.772
Gfo_R007597 Geospiza fortis Gfo_R007597 N 0.772
ENSPFOG00000003939 Poecilia formosa ENSPFOG00000003939 I 0.752
ENSXMAG00000003932 Xiphophorus maculatus ENSXMAG00000003932 I 0.750
ENSLOCG00000003370 Lepisosteus oculatus ENSLOCG00000003370 I 0.742
mbd2.S Xenopus laevis XB-GENE-493780 I 0.742
ENSMEUG00000003078 Macropus eugenii ENSMEUG00000003078 N 0.733
MBD2 Cavia porcellus ENSCPOG00000006832 I 0.733
Ogr03458 Ophisaurus gracilis Ogr03458 I 0.733
Mbd2 Rattus norvegicus ENSRNOG00000011853 I 0.733
ENSONIG00000012635 Oreochromis niloticus ENSONIG00000012635 I 0.733
MBD2 Sus scrofa ENSSSCG00000004528 I 0.733
ENSECAG00000022368 Equus caballus ENSECAG00000022368 I 0.733
Mbd2 Mus musculus ENSMUSG00000024513 D 0.725
MBD2 Otolemur garnettii ENSOGAG00000008028 I 0.725
MBD3 Dasypus novemcinctus ENSDNOG00000031786 N 0.725
ENSTNIG00000003709 Tetraodon nigroviridis ENSTNIG00000003709 I 0.725
ENSACAG00000008739 Anolis carolinensis ENSACAG00000008739 I 0.725
ENSTRUG00000006522 Takifugu rubripes ENSTRUG00000006522 I 0.725
MBD2 Callithrix jacchus ENSCJAG00000001862 I 0.717
ENSCSAG00000018106 Chlorocebus sabaeus ENSCSAG00000018106 I 0.717
MBD2 Tupaia belangeri ENSTBEG00000015292 I 0.717
ENSGACG00000018294 Gasterosteus aculeatus ENSGACG00000018294 I 0.717
MBD3 Sus scrofa ENSSSCG00000013435 N 0.712
ENSLACG00000016038 Latimeria chalumnae ENSLACG00000016038 I 0.708
ENSAMXG00000006553 Astyanax mexicanus ENSAMXG00000006553 N 0.708