POPTR_0015s13860 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0015s13860 T278482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR18
M02313_2.00 		Arabidopsis thaliana
NNNNAGATAYGNN
NNCRTATCTNNNN		 PBM
Weirauch et al.(2014)
pTH8840 		0.670 0.660
AT5G05090
M02305_2.00 		Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN		 PBM
Weirauch et al.(2014)
pTH7104 		0.665 0.638
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s13860.1 Myb 217 267

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014309 Ricinus communis 30147.m014309 N 0.849
orange1.1g040406m.g Citrus sinensis orange1.1g040406m.g N 0.834
Ciclev10006586m.g Citrus clementina Ciclev10006586m.g N 0.834
POPTR_0012s13900 Populus trichocarpa POPTR_0012s13900 N 0.831
cassava35050.m1 Manihot esculenta cassava35050.m1 N 0.812
PRUPE_ppa023185mg Prunus persica PRUPE_ppa023185mg N 0.800
gene13325-v1.0-hybrid Fragaria vesca gene13325-v1.0-hybrid N 0.800
SapurV1A.0400s0190 Salix purpurea SapurV1A.0400s0190 N 0.780
Ciclev10006834m.g Citrus clementina Ciclev10006834m.g N 0.769
orange1.1g043479m.g Citrus sinensis orange1.1g043479m.g N 0.769
ARR21 Arabidopsis thaliana AT5G07210 N 0.755
Cucsa.251000 Cucumis sativus Cucsa.251000 N 0.743
Cla006313 Citrullus lanatus Cla006313 N 0.743
mgf019327m Mimulus guttatus mgf019327m N 0.737
evm.TU.supercontig_107.3 Carica papaya evm.TU.supercontig_107.3 N 0.734
MTR_0450s0040 Medicago truncatula MTR_0450s0040 I 0.734
cassava21270.m1 Manihot esculenta cassava21270.m1 N 0.733
Bra028705 Brassica rapa Bra028705 N 0.724
Bra009284 Brassica rapa Bra009284 N 0.724
Thhalv10016040m.g Eutrema salsugineum Thhalv10016040m.g N 0.724
Bo9g175250 Brassica oleracea Bo9g175250 N 0.724
Bo2g007540 Brassica oleracea Bo2g007540 N 0.724
mgf018042m Mimulus guttatus mgf018042m N 0.722
ARR21 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000557 N 0.716
Bostr.13129s0247 Boechera stricta Bostr.13129s0247 N 0.716
Carubv10003421m.g Capsella rubella Carubv10003421m.g N 0.716
MDP0000228719 Malus domestica MDP0000228719 N 0.706
GLYMA16G32311 Glycine max GLYMA16G32311 I 0.702
TCM_015085 Theobroma cacao TCM_015085 I 0.701
IGS.gm_5_00099 Chlorella NC64A IGS.gm_5_00099 N 0.700
Cla007104 Citrullus lanatus Cla007104 N 0.700
VIT_16s0100g00420 Vitis vinifera VIT_16s0100g00420 I 0.700
Carubv10006317m.g Capsella rubella Carubv10006317m.g N 0.695
Cagra.6496s0001 Capsella grandiflora Cagra.6496s0001 N 0.694
Carubv10007858m.g Capsella rubella Carubv10007858m.g N 0.694
GLYMA09G27151 Glycine max GLYMA09G27151 N 0.692
Gorai.001G030600 Gossypium raimondii Gorai.001G030600 I 0.691
cassava37074.valid.m1 Manihot esculenta cassava37074.valid.m1 I 0.691
cassava37075.valid.m1 Manihot esculenta cassava37075.valid.m1 I 0.691
Gorai.008G280500 Gossypium raimondii Gorai.008G280500 I 0.686
TCM_045790 Theobroma cacao TCM_045790 I 0.683
Ca_20899 Cicer arietinum Ca_20899 I 0.677
mgf008790m Mimulus guttatus mgf008790m I 0.672
ARR18 Arabidopsis thaliana AT5G58080 D 0.670
ARR18 Arabidopsis lyrata Al_scaffold_0008_2276 I 0.670
VIT_16s0100g00430 Vitis vinifera VIT_16s0100g00430 N 0.669
Cagra.0834s0003 Capsella grandiflora Cagra.0834s0003 I 0.665
Bostr.13129s0456 Boechera stricta Bostr.13129s0456 I 0.665
Bostr.27991s0013 Boechera stricta Bostr.27991s0013 I 0.665
Aquca_009_00074 Aquilegia coerulea Aquca_009_00074 I 0.665
Bostr.9345s0035 Boechera stricta Bostr.9345s0035 I 0.665
Bostr.19424s0999 Boechera stricta Bostr.19424s0999 I 0.665
Ciclev10012203m.g Citrus clementina Ciclev10012203m.g I 0.665
MDP0000846313 Malus domestica MDP0000846313 I 0.665
Lus10038996.g Linum usitatissimum Lus10038996.g I 0.665
Lus10027291.g Linum usitatissimum Lus10027291.g I 0.665
Lus10012102.g Linum usitatissimum Lus10012102.g I 0.665
orange1.1g020690m.g Citrus sinensis orange1.1g020690m.g I 0.665
Thhalv10014387m.g Eutrema salsugineum Thhalv10014387m.g I 0.665
chr1.CM0269.130.nd Lotus japonicus chr1.CM0269.130.nd I 0.665
PK23977.1 Cannabis sativa PK23977.1 I 0.665
Thhalv10021133m.g Eutrema salsugineum Thhalv10021133m.g I 0.665
Thhalv10017945m.g Eutrema salsugineum Thhalv10017945m.g I 0.665
Lus10010442.g Linum usitatissimum Lus10010442.g I 0.665
Gorai.007G351500 Gossypium raimondii Gorai.007G351500 I 0.665
Carubv10024859m.g Capsella rubella Carubv10024859m.g I 0.665
Carubv10014134m.g Capsella rubella Carubv10014134m.g I 0.665
Carubv10003130m.g Capsella rubella Carubv10003130m.g I 0.665
Cagra.1642s0062 Capsella grandiflora Cagra.1642s0062 I 0.665
mgf014801m Mimulus guttatus mgf014801m I 0.665
Eucgr.A02201 Eucalyptus grandis Eucgr.A02201 I 0.665
Gorai.002G230800 Gossypium raimondii Gorai.002G230800 I 0.665
gene17673-v1.0-hybrid Fragaria vesca gene17673-v1.0-hybrid I 0.665
evm.TU.supercontig_92.70 Carica papaya evm.TU.supercontig_92.70 I 0.665
Eucgr.K01670 Eucalyptus grandis Eucgr.K01670 I 0.665
Cagra.1504s0014 Capsella grandiflora Cagra.1504s0014 I 0.665
Cla017714 Citrullus lanatus Cla017714 I 0.665
GLYMA02G21820 Glycine max GLYMA02G21820 I 0.665
BRADI2G25380 Brachypodium distachyon BRADI2G25380 I 0.665
Bra034144 Brassica rapa Bra034144 I 0.665
Bra029866 Brassica rapa Bra029866 I 0.665
GLYMA03G27890 Glycine max GLYMA03G27890 I 0.665
GLYMA19G30700 Glycine max GLYMA19G30700 I 0.665
GSMUA_Achr5G27500_001 Musa acuminata GSMUA_Achr5G27500_001 I 0.665
GSMUA_Achr2G01920_001 Musa acuminata GSMUA_Achr2G01920_001 I 0.665
GSMUA_Achr11G14170_001 Musa acuminata GSMUA_Achr11G14170_001 I 0.665
GRMZM2G398055 Zea mays GRMZM2G398055 I 0.665
Bra009087 Brassica rapa Bra009087 I 0.665
Bra005837 Brassica rapa Bra005837 I 0.665
BGIOSGA018058 Oryza indica BGIOSGA018058 I 0.665
AT5G05090 Arabidopsis thaliana AT5G05090 D 0.665
AT3G10760 Arabidopsis thaliana AT3G10760 I 0.665
MYBC1 Arabidopsis thaliana AT2G40970 I 0.665
Bo3g003150 Brassica oleracea Bo3g003150 I 0.665
Bo4g012890 Brassica oleracea Bo4g012890 I 0.665
Bra004593 Brassica rapa Bra004593 I 0.665
Bo9g177390 Brassica oleracea Bo9g177390 I 0.665
Bo5g137150 Brassica oleracea Bo5g137150 I 0.665
Bo5g019990 Brassica oleracea Bo5g019990 I 0.665
GSMUA_Achr8G05880_001 Musa acuminata GSMUA_Achr8G05880_001 I 0.665
LPERR05G13030 Leersia perrieri LPERR05G13030 I 0.665
Ca_07144 Cicer arietinum Ca_07144 I 0.665
VIT_08s0040g00900 Vitis vinifera VIT_08s0040g00900 I 0.665
Solyc10g078310.1 Solanum lycopersicum Solyc10g078310.1 I 0.665
scaffold_600469.1 Arabidopsis lyrata scaffold_600469.1 I 0.665
Cla012286 Citrullus lanatus Cla012286 I 0.665
Pm031149 Prunus mume Pm031149 I 0.665
Cucsa.358530 Cucumis sativus Cucsa.358530 I 0.665
Cucsa.140020 Cucumis sativus Cucsa.140020 I 0.665
cassava20582.m1 Manihot esculenta cassava20582.m1 I 0.665
30180.m001019 Ricinus communis 30180.m001019 I 0.665
MYBC1 Arabidopsis lyrata scaffold_402901.1 I 0.665
scaffold_301238.1 Arabidopsis lyrata scaffold_301238.1 I 0.665
ONIVA05G17050 Oryza nivara ONIVA05G17050 I 0.665
OMERI05G06680 Oryza meridionalis OMERI05G06680 I 0.665
MTR_7g089010 Medicago truncatula MTR_7g089010 I 0.665
MLOC_24056 Hordeum vulgare MLOC_24056 I 0.665
OPUNC05G14480 Oryza punctata OPUNC05G14480 I 0.665
ORGLA05G0141400 Oryza glaberrima ORGLA05G0141400 I 0.665
PRUPE_ppa026577mg Prunus persica PRUPE_ppa026577mg I 0.665
PGSC0003DMG400007174 Solanum tuberosum PGSC0003DMG400007174 I 0.665
OS05G0412000 Oryza sativa OS05G0412000 I 0.665
Cucsa.362450 Cucumis sativus Cucsa.362450 N 0.662
Sb09g020340 Sorghum bicolor Sb09g020340 I 0.661