Gorai.008G280500 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.008G280500 T287690_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR1
M02296_2.00 		Arabidopsis thaliana
NDGATHYBNN
NNVRDATCHN		 PBM
Weirauch et al.(2014)
pTH8257 		0.700 0.723
ARR1
M02297_2.00 		Arabidopsis thaliana
NAAGATHCKN
NMGDATCTTN		 PBM
Weirauch et al.(2014)
pTH8590 		0.685 0.702
ARR18
M02313_2.00 		Arabidopsis thaliana
NNNNAGATAYGNN
NNCRTATCTNNNN		 PBM
Weirauch et al.(2014)
pTH8840 		0.678 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G280500.1 Myb 210 260

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_015085 Theobroma cacao TCM_015085 I 0.827
PRUPE_ppa023185mg Prunus persica PRUPE_ppa023185mg N 0.794
AMTR_s00057p00108840 Amborella trichopoda AMTR_s00057p00108840 I 0.790
AMTR_s00086p00182350 Amborella trichopoda AMTR_s00086p00182350 I 0.781
GLYMA16G32311 Glycine max GLYMA16G32311 I 0.767
GLYMA02G09451 Glycine max GLYMA02G09451 I 0.767
MDP0000155328 Malus domestica MDP0000155328 I 0.767
MDP0000124301 Malus domestica MDP0000124301 I 0.767
MTR_1g032570 Medicago truncatula MTR_1g032570 I 0.767
GLYMA07G26890 Glycine max GLYMA07G26890 I 0.767
Ca_15151 Cicer arietinum Ca_15151 I 0.767
Pm005877 Prunus mume Pm005877 I 0.765
PRUPE_ppa002493mg Prunus persica PRUPE_ppa002493mg I 0.765
Ca_14780 Cicer arietinum Ca_14780 I 0.764
orange1.1g040406m.g Citrus sinensis orange1.1g040406m.g N 0.760
Ca_20899 Cicer arietinum Ca_20899 I 0.760
Ciclev10006586m.g Citrus clementina Ciclev10006586m.g N 0.760
cassava35050.m1 Manihot esculenta cassava35050.m1 N 0.760
GLYMA09G27151 Glycine max GLYMA09G27151 N 0.757
MTR_7g026400 Medicago truncatula MTR_7g026400 I 0.757
MTR_0450s0040 Medicago truncatula MTR_0450s0040 I 0.747
30147.m014309 Ricinus communis 30147.m014309 N 0.745
mgf018042m Mimulus guttatus mgf018042m N 0.745
gene13325-v1.0-hybrid Fragaria vesca gene13325-v1.0-hybrid N 0.745
evm.TU.supercontig_107.3 Carica papaya evm.TU.supercontig_107.3 N 0.742
PGSC0003DMG400007823 Solanum tuberosum PGSC0003DMG400007823 I 0.733
evm.TU.supercontig_46.117 Carica papaya evm.TU.supercontig_46.117 I 0.733
Eucgr.C00380 Eucalyptus grandis Eucgr.C00380 I 0.733
Pm027701 Prunus mume Pm027701 I 0.733
Solyc12g010330.1 Solanum lycopersicum Solyc12g010330.1 I 0.733
PRUPE_ppa018934mg Prunus persica PRUPE_ppa018934mg I 0.733
Gorai.009G054200 Gossypium raimondii Gorai.009G054200 I 0.733
MTR_2g034960 Medicago truncatula MTR_2g034960 I 0.722
MDP0000311914 Malus domestica MDP0000311914 I 0.721
Carubv10026052m.g Capsella rubella Carubv10026052m.g I 0.717
Gorai.004G291100 Gossypium raimondii Gorai.004G291100 I 0.717
TCM_037098 Theobroma cacao TCM_037098 I 0.717
29737.m001227 Ricinus communis 29737.m001227 I 0.717
cassava262.valid.m1 Manihot esculenta cassava262.valid.m1 I 0.717
GLYMA09G14650 Glycine max GLYMA09G14650 I 0.717
Bra020390 Brassica rapa Bra020390 I 0.717
Bostr.26833s0442 Boechera stricta Bostr.26833s0442 I 0.717
chr6.CM0037.920.nc Lotus japonicus chr6.CM0037.920.nc I 0.717
Bo2g028820 Brassica oleracea Bo2g028820 I 0.717
GLYMA15G24770 Glycine max GLYMA15G24770 I 0.717
Thhalv10015296m.g Eutrema salsugineum Thhalv10015296m.g I 0.717
Cagra.0891s0003 Capsella grandiflora Cagra.0891s0003 I 0.717
Cla006313 Citrullus lanatus Cla006313 N 0.714
chr5.CM0345.260.nd Lotus japonicus chr5.CM0345.260.nd I 0.714
Cucsa.251000 Cucumis sativus Cucsa.251000 N 0.714
mgf019327m Mimulus guttatus mgf019327m N 0.711
cassava21270.m1 Manihot esculenta cassava21270.m1 N 0.711
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I 0.710
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I 0.710
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I 0.710
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I 0.710
Cla007104 Citrullus lanatus Cla007104 N 0.708
VIT_16s0100g00420 Vitis vinifera VIT_16s0100g00420 I 0.708
chr4.CM0042.1440.nc Lotus japonicus chr4.CM0042.1440.nc I 0.707
TRIUR3_30130 Triticum urartu TRIUR3_30130 I 0.706
cassava18405.valid.m1 Manihot esculenta cassava18405.valid.m1 I 0.706
cassava18404.valid.m1 Manihot esculenta cassava18404.valid.m1 I 0.706
POPTR_0012s13900 Populus trichocarpa POPTR_0012s13900 N 0.705
Cagra.5497s0018 Capsella grandiflora Cagra.5497s0018 I 0.700
Bostr.28625s0008 Boechera stricta Bostr.28625s0008 I 0.700
Carubv10013107m.g Capsella rubella Carubv10013107m.g I 0.700
Gorai.006G259700 Gossypium raimondii Gorai.006G259700 I 0.700
Bo5g123620 Brassica oleracea Bo5g123620 I 0.700
Bra022183 Brassica rapa Bra022183 I 0.700
ARR1 Arabidopsis lyrata fgenesh2_kg.3__1853__AT3G16857.2 I 0.700
Bo3g068550 Brassica oleracea Bo3g068550 I 0.700
Bra001643 Brassica rapa Bra001643 I 0.700
ARR1 Arabidopsis thaliana AT3G16857 D 0.700
VIT_16s0100g00430 Vitis vinifera VIT_16s0100g00430 N 0.695
Ciclev10006834m.g Citrus clementina Ciclev10006834m.g N 0.695
orange1.1g043479m.g Citrus sinensis orange1.1g043479m.g N 0.695
POPTR_0015s13860 Populus trichocarpa POPTR_0015s13860 I 0.686
Thhalv10024686m.g Eutrema salsugineum Thhalv10024686m.g I 0.685
PK26059.1 Cannabis sativa PK26059.1 I 0.685
Aquca_003_00615 Aquilegia coerulea Aquca_003_00615 I 0.685
Bostr.30275s0051 Boechera stricta Bostr.30275s0051 I 0.685
Cagra.0053s0018 Capsella grandiflora Cagra.0053s0018 I 0.685
Gorai.002G029200 Gossypium raimondii Gorai.002G029200 I 0.685
evm.TU.supercontig_9.105 Carica papaya evm.TU.supercontig_9.105 I 0.685
Eucgr.A00189 Eucalyptus grandis Eucgr.A00189 I 0.685
Ciclev10004470m.g Citrus clementina Ciclev10004470m.g I 0.685
Carubv10007581m.g Capsella rubella Carubv10007581m.g I 0.685
Gorai.011G196400 Gossypium raimondii Gorai.011G196400 I 0.685
MDP0000224740 Malus domestica MDP0000224740 I 0.685
Lus10037719.g Linum usitatissimum Lus10037719.g I 0.685
Lus10016846.g Linum usitatissimum Lus10016846.g I 0.685
MDP0000290818 Malus domestica MDP0000290818 I 0.685
Cla022101 Citrullus lanatus Cla022101 I 0.685
POPTR_0010s00320 Populus trichocarpa POPTR_0010s00320 I 0.685
POPTR_0008s22990 Populus trichocarpa POPTR_0008s22990 I 0.685
PGSC0003DMG401025624 Solanum tuberosum PGSC0003DMG401025624 I 0.685
PRUPE_ppa002408mg Prunus persica PRUPE_ppa002408mg I 0.685
ARR2 Arabidopsis lyrata scaffold_702902.1 I 0.685
Solyc05g054390.2 Solanum lycopersicum Solyc05g054390.2 I 0.685
Solyc01g065540.2 Solanum lycopersicum Solyc01g065540.2 I 0.685
SELMODRAFT_173793 Selaginella moellendorffii SELMODRAFT_173793 I 0.685
PGSC0003DMG400023534 Solanum tuberosum PGSC0003DMG400023534 I 0.685
MTR_4g121020 Medicago truncatula MTR_4g121020 I 0.685
F775_03134 Aegilops tauschii F775_03134 I 0.685
Bra033527 Brassica rapa Bra033527 I 0.685
Bo1g055180 Brassica oleracea Bo1g055180 I 0.685
F775_03846 Aegilops tauschii F775_03846 I 0.685
GLYMA07G37220 Glycine max GLYMA07G37220 I 0.685
GSMUA_Achr9G16610_001 Musa acuminata GSMUA_Achr9G16610_001 I 0.685
GLYMA17G03380 Glycine max GLYMA17G03380 I 0.685
GLYMA15G15520 Glycine max GLYMA15G15520 I 0.685
TCM_021300 Theobroma cacao TCM_021300 I 0.685
SELMODRAFT_450181 Selaginella moellendorffii SELMODRAFT_450181 I 0.685
TRIUR3_25232 Triticum urartu TRIUR3_25232 I 0.685
29889.m003245 Ricinus communis 29889.m003245 I 0.685
VIT_05s0077g01480 Vitis vinifera VIT_05s0077g01480 I 0.685
cassava43032.valid.m1 Manihot esculenta cassava43032.valid.m1 I 0.685
Ca_02989 Cicer arietinum Ca_02989 I 0.685
Cucsa.252760 Cucumis sativus Cucsa.252760 I 0.685
TRIUR3_20429 Triticum urartu TRIUR3_20429 I 0.685
Cla009424 Citrullus lanatus Cla009424 I 0.685
Ciclev10014527m.g Citrus clementina Ciclev10014527m.g I 0.678
Aquca_091_00086 Aquilegia coerulea Aquca_091_00086 I 0.678
27647.m000179 Ricinus communis 27647.m000179 I 0.678
orange1.1g005938m.g Citrus sinensis orange1.1g005938m.g I 0.678
SapurV1A.0055s0320 Salix purpurea SapurV1A.0055s0320 I 0.678
GSMUA_Achr1G22230_001 Musa acuminata GSMUA_Achr1G22230_001 I 0.678
PGSC0003DMG400029514 Solanum tuberosum PGSC0003DMG400029514 I 0.678
GSMUA_Achr8G30850_001 Musa acuminata GSMUA_Achr8G30850_001 I 0.678
POPTR_0010s11600 Populus trichocarpa POPTR_0010s11600 I 0.678
Solyc04g008050.2 Solanum lycopersicum Solyc04g008050.2 I 0.678
evm.TU.supercontig_2.186 Carica papaya evm.TU.supercontig_2.186 I 0.678
Eucgr.G02094 Eucalyptus grandis Eucgr.G02094 I 0.678
TCM_011067 Theobroma cacao TCM_011067 I 0.678
AMTR_s00176p00045260 Amborella trichopoda AMTR_s00176p00045260 I 0.678
ARR18 Arabidopsis thaliana AT5G58080 D 0.678
ARR18 Arabidopsis lyrata Al_scaffold_0008_2276 I 0.678
Gorai.005G156900 Gossypium raimondii Gorai.005G156900 I 0.678
ARR14 Vitis vinifera VIT_01s0011g05830 I 0.678
Bostr.0556s0001 Boechera stricta Bostr.0556s0001 I 0.676
mgf010113m Mimulus guttatus mgf010113m I 0.676
Cagra.2235s0034 Capsella grandiflora Cagra.2235s0034 I 0.676
mgf012203m Mimulus guttatus mgf012203m I 0.676
Carubv10018465m.g Capsella rubella Carubv10018465m.g I 0.676
IGS.gm_5_00099 Chlorella NC64A IGS.gm_5_00099 N 0.672
estExt_Genewise1.C_90203 Chlorella NC64A estExt_Genewise1.C_90203 I 0.672
gene05178-v1.0-hybrid Fragaria vesca gene05178-v1.0-hybrid I 0.665
LjSGA_066155.1 Lotus japonicus LjSGA_066155.1 I 0.664
MDP0000228719 Malus domestica MDP0000228719 N 0.662
LjSGA_125152.1 Lotus japonicus LjSGA_125152.1 I 0.661