CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0018s08500
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0018s08500
T278524_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0018s08500.1
Myb
17
64
KGAWTAEEDQKLARVIEIHGPKRWRSIAAKADLNRCGKSCRLRWMNHL
POPTR_0018s08500.1
Myb
70
115
RGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHL
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0710s0030
Salix purpurea
SapurV1A.0710s0030
I
0.875
SapurV1A.0435s0070
Salix purpurea
SapurV1A.0435s0070
N
0.875
POPTR_0006s23780
Populus trichocarpa
POPTR_0006s23780
I
0.875
TCM_037383
Theobroma cacao
TCM_037383
I
0.865
Gorai.009G040800
Gossypium raimondii
Gorai.009G040800
N
0.857
PRUPE_ppa026916mg
Prunus persica
PRUPE_ppa026916mg
I
0.849
Pm005577
Prunus mume
Pm005577
I
0.849
MDP0000261265
Malus domestica
MDP0000261265
I
0.835
Gorai.009G040900
Gossypium raimondii
Gorai.009G040900
N
0.828
SapurV1A.4052s0010
Salix purpurea
SapurV1A.4052s0010
N
0.827
SapurV1A.0177s0340
Salix purpurea
SapurV1A.0177s0340
N
0.827
SapurV1A.0177s0330
Salix purpurea
SapurV1A.0177s0330
N
0.827
Cla012784
Citrullus lanatus
Cla012784
N
0.823
Cucsa.340790
Cucumis sativus
Cucsa.340790
N
0.823
Eucgr.C00725
Eucalyptus grandis
Eucgr.C00725
I
0.816
Eucgr.B01869
Eucalyptus grandis
Eucgr.B01869
I
0.810
evm.TU.supercontig_25.115
Carica papaya
evm.TU.supercontig_25.115
N
0.807
SapurV1A.0002s0910
Salix purpurea
SapurV1A.0002s0910
N
0.806
Eucgr.B01964
Eucalyptus grandis
Eucgr.B01964
I
0.802
GLYMA05G04900
Glycine max
GLYMA05G04900
I
0.801
Gorai.010G096800
Gossypium raimondii
Gorai.010G096800
N
0.801
evm.TU.supercontig_46.144
Carica papaya
evm.TU.supercontig_46.144
N
0.793
TCM_029126
Theobroma cacao
TCM_029126
N
0.791
cassava2804.m1
Manihot esculenta
cassava2804.m1
N
0.788
MDP0000124555
Malus domestica
MDP0000124555
N
0.788
POPTR_0001s16970
Populus trichocarpa
POPTR_0001s16970
N
0.787
Eucgr.F04422
Eucalyptus grandis
Eucgr.F04422
N
0.787
Eucgr.D02099
Eucalyptus grandis
Eucgr.D02099
N
0.785
TCM_015933
Theobroma cacao
TCM_015933
I
0.783
Pm013277
Prunus mume
Pm013277
N
0.780
PRUPE_ppa016135mg
Prunus persica
PRUPE_ppa016135mg
N
0.780
Pm023419
Prunus mume
Pm023419
N
0.780
cassava31571.valid.m1
Manihot esculenta
cassava31571.valid.m1
N
0.780
gene08880-v1.0-hybrid
Fragaria vesca
gene08880-v1.0-hybrid
N
0.780
Gorai.009G146500
Gossypium raimondii
Gorai.009G146500
N
0.777
PRUPE_ppa024533mg
Prunus persica
PRUPE_ppa024533mg
N
0.777
gene07418-v1.0-hybrid
Fragaria vesca
gene07418-v1.0-hybrid
N
0.775
VIT_04s0008g01870
Vitis vinifera
VIT_04s0008g01870
I
0.775
VIT_09s0002g01380
Vitis vinifera
VIT_09s0002g01380
N
0.772
Ciclev10009521m.g
Citrus clementina
Ciclev10009521m.g
N
0.769
orange1.1g028922m.g
Citrus sinensis
orange1.1g028922m.g
N
0.769
MDP0000253904
Malus domestica
MDP0000253904
N
0.766
MDP0000226215
Malus domestica
MDP0000226215
N
0.766
evm.TU.supercontig_126.30
Carica papaya
evm.TU.supercontig_126.30
N
0.765
orange1.1g036591m.g
Citrus sinensis
orange1.1g036591m.g
I
0.764
Ciclev10026498m.g
Citrus clementina
Ciclev10026498m.g
I
0.764
mgf018735m
Mimulus guttatus
mgf018735m
N
0.762
POPTR_0003s06320
Populus trichocarpa
POPTR_0003s06320
N
0.758
GLYMA17G15270
Glycine max
GLYMA17G15270
I
0.756
Eucgr.F04423
Eucalyptus grandis
Eucgr.F04423
N
0.752
MDP0000931057
Malus domestica
MDP0000931057
N
0.748
MDP0000133817
Malus domestica
MDP0000133817
I
0.747
MDP0000143276
Malus domestica
MDP0000143276
I
0.747
GLYMA01G41610
Glycine max
GLYMA01G41610
N
0.742
Gorai.004G196800
Gossypium raimondii
Gorai.004G196800
N
0.741
gene15383-v1.0-hybrid
Fragaria vesca
gene15383-v1.0-hybrid
N
0.739
VIT_00s0341g00050
Vitis vinifera
VIT_00s0341g00050
N
0.737
cassava9944.m1
Manihot esculenta
cassava9944.m1
I
0.736
POPTR_0003s07680
Populus trichocarpa
POPTR_0003s07680
N
0.734
Eucgr.E00407
Eucalyptus grandis
Eucgr.E00407
N
0.730
cassava33302.m1
Manihot esculenta
cassava33302.m1
I
0.729
orange1.1g028843m.g
Citrus sinensis
orange1.1g028843m.g
N
0.716
Ciclev10022303m.g
Citrus clementina
Ciclev10022303m.g
N
0.716
SapurV1A.1360s0110
Salix purpurea
SapurV1A.1360s0110
N
0.712
SapurV1A.1087s0090
Salix purpurea
SapurV1A.1087s0090
N
0.712
MTR_4g100720
Medicago truncatula
MTR_4g100720
N
0.705
Gorai.012G011700
Gossypium raimondii
Gorai.012G011700
N
0.704
GSMUA_Achr11G23500_001
Musa acuminata
GSMUA_Achr11G23500_001
N
0.698
PK08631.1
Cannabis sativa
PK08631.1
N
0.696
GLYMA11G03770
Glycine max
GLYMA11G03770
N
0.694
Ca_12762
Cicer arietinum
Ca_12762
N
0.684
GSMUA_Achr2G17960_001
Musa acuminata
GSMUA_Achr2G17960_001
N
0.683
PDK_20s13009436g002
Phoenix dactylifera
PDK_20s13009436g002
I
0.682
Gorai.013G114900
Gossypium raimondii
Gorai.013G114900
I
0.682
Pm027048
Prunus mume
Pm027048
I
0.674
PRUPE_ppa017136mg
Prunus persica
PRUPE_ppa017136mg
I
0.674
GSMUA_Achr3G07950_001
Musa acuminata
GSMUA_Achr3G07950_001
I
0.672
TRIUR3_09734
Triticum urartu
TRIUR3_09734
I
0.672
Gorai.007G179300
Gossypium raimondii
Gorai.007G179300
I
0.668
SapurV1A.0120s0010
Salix purpurea
SapurV1A.0120s0010
I
0.668
Pm005573
Prunus mume
Pm005573
I
0.667
PRUPE_ppa015883mg
Prunus persica
PRUPE_ppa015883mg
I
0.667
SapurV1A.1730s0020
Salix purpurea
SapurV1A.1730s0020
I
0.666
SapurV1A.0390s0200
Salix purpurea
SapurV1A.0390s0200
I
0.666
Gorai.001G015200
Gossypium raimondii
Gorai.001G015200
I
0.665
mgf024953m
Mimulus guttatus
mgf024953m
N
0.665
GSMUA_Achr8G14540_001
Musa acuminata
GSMUA_Achr8G14540_001
N
0.665
AMTR_s00030p00146410
Amborella trichopoda
AMTR_s00030p00146410
I
0.663
MDP0000887107
Malus domestica
MDP0000887107
I
0.663
Eucgr.C00826
Eucalyptus grandis
Eucgr.C00826
I
0.663
Traes_4DL_26A958CDD
Triticum aestivum
Traes_4DL_26A958CDD
I
0.662
F775_19148
Aegilops tauschii
F775_19148
I
0.662
Traes_4DL_8A9D9ACCB
Triticum aestivum
Traes_4DL_8A9D9ACCB
I
0.662