gene01997-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene01997-v1.0-hybrid T287223_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.670 0.699
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.670 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01997.1-v1.0-hybrid Myb 14 61
mrna01997.1-v1.0-hybrid Myb 67 112

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I 0.752
TCM_007868 Theobroma cacao TCM_007868 I 0.750
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I 0.746
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I 0.743
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I 0.738
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I 0.738
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.736
Lus10018518.g Linum usitatissimum Lus10018518.g N 0.723
cassava14699.m1 Manihot esculenta cassava14699.m1 I 0.720
SapurV1A.0048s0170 Salix purpurea SapurV1A.0048s0170 I 0.714
SapurV1A.2051s0040 Salix purpurea SapurV1A.2051s0040 I 0.714
GLYMA12G11330 Glycine max GLYMA12G11330 I 0.702
Sb04g028850 Sorghum bicolor Sb04g028850 I 0.701
Pavir.Aa00435 Panicum virgatum Pavir.Aa00435 I 0.701
Si020225m.g Setaria italica Si020225m.g I 0.701
Gorai.013G073000 Gossypium raimondii Gorai.013G073000 N 0.701
GRMZM2G055158 Zea mays GRMZM2G055158 I 0.701
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I 0.696
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I 0.696
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I 0.696
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I 0.693
BGIOSGA005676 Oryza indica BGIOSGA005676 I 0.692
OS02G0732600 Oryza sativa OS02G0732600 I 0.692
OB02G38450 Oryza brachyantha OB02G38450 I 0.692
ORGLA02G0269000 Oryza glaberrima ORGLA02G0269000 I 0.692
OGLUM02G32070 Oryza glumaepatula OGLUM02G32070 I 0.692
ORUFI02G33090 Oryza rufipogon ORUFI02G33090 I 0.692
mgf022158m Mimulus guttatus mgf022158m N 0.690
mgf018684m Mimulus guttatus mgf018684m N 0.690
OB0039G10010 Oryza brachyantha OB0039G10010 I 0.689
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.686
Pm015303 Prunus mume Pm015303 I 0.685
PRUPE_ppa025095mg Prunus persica PRUPE_ppa025095mg I 0.685
Gorai.004G183600 Gossypium raimondii Gorai.004G183600 I 0.685
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I 0.684
mgf019234m Mimulus guttatus mgf019234m N 0.684
GRMZM2G048295 Zea mays GRMZM2G048295 I 0.683
Sb06g022660 Sorghum bicolor Sb06g022660 I 0.683
Gorai.004G183500 Gossypium raimondii Gorai.004G183500 I 0.682
GRMZM2G147346 Zea mays GRMZM2G147346 I 0.682
mgf022141m Mimulus guttatus mgf022141m N 0.680
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.677
PK29337.1 Cannabis sativa PK29337.1 I 0.675
Sb01g019270 Sorghum bicolor Sb01g019270 I 0.675
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I 0.675
Pavir.Ia01684 Panicum virgatum Pavir.Ia01684 I 0.675
Pavir.J09313 Panicum virgatum Pavir.J09313 I 0.675
OS10G0478300 Oryza sativa OS10G0478300 I 0.675
Si040527m.g Setaria italica Si040527m.g I 0.675
BRADI3G56917 Brachypodium distachyon BRADI3G56917 I 0.675
BGIOSGA031688 Oryza indica BGIOSGA031688 I 0.675
F775_17058 Aegilops tauschii F775_17058 I 0.675
TRIUR3_16495 Triticum urartu TRIUR3_16495 I 0.675
Pavir.Ab02913 Panicum virgatum Pavir.Ab02913 I 0.674
Solyc09g090130.2 Solanum lycopersicum Solyc09g090130.2 I 0.674
PGSC0003DMG400017223 Solanum tuberosum PGSC0003DMG400017223 I 0.674
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.672
AC206901.3_FG005 Zea mays AC206901.3_FG005 I 0.672
ATMYB13 Arabidopsis thaliana AT1G06180 D 0.670
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.670
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.670
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.669
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.669
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.668
GSMUA_Achr1G22380_001 Musa acuminata GSMUA_Achr1G22380_001 I 0.668
MTR_0063s0090 Medicago truncatula MTR_0063s0090 N 0.667
Solyc08g076700.1 Solanum lycopersicum Solyc08g076700.1 I 0.664
GLYMA06G45531 Glycine max GLYMA06G45531 N 0.664
SapurV1A.0417s0140 Salix purpurea SapurV1A.0417s0140 N 0.662
TRIUR3_31731 Triticum urartu TRIUR3_31731 I 0.661
cassava26895.m1 Manihot esculenta cassava26895.m1 N 0.661
MDP0000897594 Malus domestica MDP0000897594 I 0.661
GSMUA_Achr1G09180_001 Musa acuminata GSMUA_Achr1G09180_001 I 0.661
cassava37350.valid.m1 Manihot esculenta cassava37350.valid.m1 I 0.661
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I 0.661