Bra031949 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra031949 T292656_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC047
M07198_2.00 		Arabidopsis thaliana
CACGB
VCGTG		 Dap-seq
OMalley et al.(2016)
ANAC047_colamp_a 		0.954 0.973
NAC047
M07199_2.00 		Arabidopsis thaliana
WNNNWYACGYMWYYN
NRRWKRCGTRWNNNW		 Dap-seq
OMalley et al.(2016)
ANAC047_col 		0.954 0.973
NAC045
M07194_2.00 		Arabidopsis thaliana
TTNCTTSHNNNDCAMG
CKTGHNNNDSAAGNAA		 Dap-seq
OMalley et al.(2016)
ANAC045_col_a 		0.875 0.598
NAC045
M07195_2.00 		Arabidopsis thaliana
TTNCTTSHNNNDCAMG
CKTGHNNNDSAAGNAA		 Dap-seq
OMalley et al.(2016)
ANAC045_colamp_a 		0.875 0.598
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra031949.1-P NAC/NAM 11 139

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra040152 Brassica rapa Bra040152 I 0.956
Bo1g152220 Brassica oleracea Bo1g152220 I 0.956
NAC047 Arabidopsis thaliana AT3G04070 D 0.954
Bostr.2570s0301 Boechera stricta Bostr.2570s0301 I 0.950
Bo5g148420 Brassica oleracea Bo5g148420 I 0.950
anac047 Arabidopsis lyrata fgenesh2_kg.3__367__AT3G04070.1 I 0.950
Carubv10014000m.g Capsella rubella Carubv10014000m.g I 0.946
Cagra.2026s0001 Capsella grandiflora Cagra.2026s0001 I 0.946
Thhalv10021011m.g Eutrema salsugineum Thhalv10021011m.g I 0.945
SapurV1A.1058s0080 Salix purpurea SapurV1A.1058s0080 I 0.918
SapurV1A.2115s0010 Salix purpurea SapurV1A.2115s0010 I 0.918
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I 0.918
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I 0.918
cassava35701.valid.m1 Manihot esculenta cassava35701.valid.m1 I 0.912
29950.m001173 Ricinus communis 29950.m001173 I 0.907
anac047 Vitis vinifera VIT_08s0007g07670 I 0.900
Lus10006547.g Linum usitatissimum Lus10006547.g I 0.900
POPTR_0019s04690 Populus trichocarpa POPTR_0019s04690 I 0.900
Lus10042531.g Linum usitatissimum Lus10042531.g I 0.898
POPTR_0013s05080 Populus trichocarpa POPTR_0013s05080 I 0.894
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I 0.894
SapurV1A.1196s0040 Salix purpurea SapurV1A.1196s0040 I 0.892
SapurV1A.0867s0160 Salix purpurea SapurV1A.0867s0160 I 0.892
Gorai.007G267900 Gossypium raimondii Gorai.007G267900 I 0.887
Lus10003269.g Linum usitatissimum Lus10003269.g I 0.886
TCM_026030 Theobroma cacao TCM_026030 I 0.884
GLYMA19G28476 Glycine max GLYMA19G28476 I 0.883
Gorai.013G191800 Gossypium raimondii Gorai.013G191800 I 0.881
30078.m002348 Ricinus communis 30078.m002348 I 0.876
Lus10018469.g Linum usitatissimum Lus10018469.g I 0.876
Lus10011215.g Linum usitatissimum Lus10011215.g I 0.876
Bo1g154830 Brassica oleracea Bo1g154830 I 0.875
Thhalv10022055m.g Eutrema salsugineum Thhalv10022055m.g I 0.875
NAC045 Arabidopsis thaliana AT3G03200 D 0.875
Bo5g150170 Brassica oleracea Bo5g150170 I 0.875
Bra021366 Brassica rapa Bra021366 I 0.875
Carubv10013584m.g Capsella rubella Carubv10013584m.g I 0.875
Bra032009 Brassica rapa Bra032009 I 0.875
Cagra.2098s0066 Capsella grandiflora Cagra.2098s0066 I 0.875
Bostr.19046s0031 Boechera stricta Bostr.19046s0031 I 0.875
anac045 Arabidopsis lyrata Al_scaffold_0003_260 I 0.875
GLYMA16G26740 Glycine max GLYMA16G26740 I 0.874
GLYMA16G04740 Glycine max GLYMA16G04740 I 0.873
GLYMA02G07700 Glycine max GLYMA02G07700 I 0.873
Carubv10009524m.g Capsella rubella Carubv10009524m.g I 0.872
Cagra.0946s0024 Capsella grandiflora Cagra.0946s0024 I 0.872