Gorai.013G267100 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.013G267100 T023427_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.856 0.856
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G267100.1 B3 111 213

Links

Other B3 family TFs
Other Gossypium raimondii TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27494.m000045 Ricinus communis 27494.m000045 I 0.825
27538.m000327 Ricinus communis 27538.m000327 I 0.897
29908.m005953 Ricinus communis 29908.m005953 I 0.711
30078.m002329 Ricinus communis 30078.m002329 I 0.876
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.876
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I 0.786
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.825
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.876
ARF10 Arabidopsis thaliana AT2G28350 I 0.844
ARF16 Arabidopsis thaliana AT4G30080 D 0.856
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.845
ARF10 Oryza indica BGIOSGA016767 I 0.794
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.856
Bo1g014600 Brassica oleracea Bo1g014600 I 0.845
Bo4g071620 Brassica oleracea Bo4g071620 I 0.833
Bo7g114200 Brassica oleracea Bo7g114200 I 0.845
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.825
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.856
Bra011162 Brassica rapa Bra011162 I 0.856
Bra011955 Brassica rapa Bra011955 I 0.833
Bra024109 Brassica rapa Bra024109 I 0.835
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.876
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.866
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.885
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.710
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.856
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.825
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.856
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.825
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.887
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I 0.711
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.876
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.897
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.907
Ca_02541 Cicer arietinum Ca_02541 I 0.875
Ca_08488 Cicer arietinum Ca_08488 I 0.802
Ca_17136 Cicer arietinum Ca_17136 I 0.845
Ca_17624 Cicer arietinum Ca_17624 I 0.742
Ca_26121 Cicer arietinum Ca_26121 I 0.907
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I 0.732
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.897
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I 0.701
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.887
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.845
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.876
Cla008883 Citrullus lanatus Cla008883 I 0.835
Cla013979 Citrullus lanatus Cla013979 I 0.835
Cla018574 Citrullus lanatus Cla018574 I 0.887
Cla022413 Citrullus lanatus Cla022413 I 0.722
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.887
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.835
Cucsa.381330 Cucumis sativus Cucsa.381330 I 0.701
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.835
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.804
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.704
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.876
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.897
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.866
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I 0.711
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.866
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.876
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.784
F775_32978 Aegilops tauschii F775_32978 I 0.856
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.825
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I 0.701
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.887
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.876
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.856
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.866
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.866
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.887
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.887
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.887
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.876
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.887
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.866
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.856
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.896
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.876
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.887
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I 0.711
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I 0.711
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.814
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.866
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.865
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.856
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.866
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.835
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.897
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.887
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.876
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I 0.732
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.797
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.707
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.845
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.814
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.835
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.856
Lus10009770.g Linum usitatissimum Lus10009770.g N 0.701
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.885
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.887
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.887
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.804
Lus10024753.g Linum usitatissimum Lus10024753.g N 0.701
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.887
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.804
MDP0000131481 Malus domestica MDP0000131481 I 0.897
MDP0000221322 Malus domestica MDP0000221322 I 0.897
MDP0000256621 Malus domestica MDP0000256621 I 0.711
MDP0000750392 Malus domestica MDP0000750392 I 0.856
mgf000336m Mimulus guttatus mgf000336m I 0.825
mgf005300m Mimulus guttatus mgf005300m I 0.866
mgf016139m Mimulus guttatus mgf016139m I 0.854
mgf024607m Mimulus guttatus mgf024607m I 0.866
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.866
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.875
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.701
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.845
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.876
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.876
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.907
MTR_7g101275 Medicago truncatula MTR_7g101275 I 0.732
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.701
OB02G32150 Oryza brachyantha OB02G32150 I 0.854
OB04G25990 Oryza brachyantha OB04G25990 I 0.742
OB06G32920 Oryza brachyantha OB06G32920 I 0.876
OB10G20590 Oryza brachyantha OB10G20590 I 0.856
OBART04G18910 Oryza barthii OBART04G18910 I 0.794
OBART06G25230 Oryza barthii OBART06G25230 I 0.876
OBART10G13410 Oryza barthii OBART10G13410 I 0.856
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.794
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.845
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.876
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.856
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.844
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.835
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.845
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.794
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.876
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.856
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.845
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.876
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.794
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.856
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.845
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.794
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.876
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.856
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.845
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.887
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.876
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I 0.701
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.845
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.794
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.876
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.856
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.845
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.761
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.876
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.856
ARF8 Oryza sativa OS02G0628600 I 0.845
OS04G0519700 Oryza sativa OS04G0519700 I 0.794
ARF18 Oryza sativa OS06G0685700 I 0.876
ARF22 Oryza sativa OS10G0479900 I 0.856
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.866
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.812
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.842
Pavir.J03524 Panicum virgatum Pavir.J03524 I 0.701
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.812
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.876
Pavir.J37640 Panicum virgatum Pavir.J37640 I 0.722
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.882
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.875
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.887
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.776
PK13064.1 Cannabis sativa PK13064.1 I 0.856
PK13393.1 Cannabis sativa PK13393.1 I 0.745
PK17007.1 Cannabis sativa PK17007.1 I 0.876
Pm018533 Prunus mume Pm018533 I 0.845
Pm019126 Prunus mume Pm019126 I 0.722
Pm030120 Prunus mume Pm030120 I 0.887
Pm031275 Prunus mume Pm031275 I 0.897
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I 0.701
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.887
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I 0.711
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.845
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.866
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.866
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.866
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.887
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.887
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.887
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.856
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I 0.722
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.845
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.835
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.897
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I 0.711
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.856
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.856
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.876
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.866
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.865
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.876
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.856
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.753
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.812
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.812
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.753
Si005991m.g Setaria italica Si005991m.g I 0.876
Si009541m.g Setaria italica Si009541m.g I 0.804
Si016509m.g Setaria italica Si016509m.g I 0.865
Si034525m.g Setaria italica Si034525m.g I 0.866
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.776
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.887
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.763
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.887
TCM_022163 Theobroma cacao TCM_022163 I 0.876
TCM_029792 Theobroma cacao TCM_029792 I 0.755
TCM_035002 Theobroma cacao TCM_035002 I 0.722
TCM_042067 Theobroma cacao TCM_042067 I 0.887
TCM_043157 Theobroma cacao TCM_043157 I 0.856
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.825
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.856
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.792
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.792
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.897
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.856
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.866