Pavir.Aa02966 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Aa02966 T072298_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q39895_SOYBN
M10048_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_01 		0.848 0.891
Q39895_SOYBN
M10049_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_02 		0.848 0.891
HY5
M06790_2.00 		Arabidopsis thaliana
DNHGVTGACGTSDMN
NKHSACGTCABCDNH		 Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a 		0.848 0.844
HY5
M08407_2.00 		Arabidopsis thaliana
NNHGMCACGTGKCDNN
NNHGMCACGTGKCDNN		 ChIP-chip
Mathelier et al.(2014)
MA0551.1 		0.848 0.844
HY5
M09919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HY5_01 		0.848 0.844
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa02966.1.p bZIP 86 149

Links

Other bZIP family TFs
Other Panicum virgatum TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N 0.000
BGIOSGA027713 Oryza indica BGIOSGA027713 N 0.000
Bo1g006000 Brassica oleracea Bo1g006000 N 0.000
Bo4g145670 Brassica oleracea Bo4g145670 I 0.000
Bo8g102040 Brassica oleracea Bo8g102040 I 0.000
Bra011655 Brassica rapa Bra011655 N 0.000
Bra030325 Brassica rapa Bra030325 I 0.000
Bra031159 Brassica rapa Bra031159 I 0.000
BRADI2G07090 Brachypodium distachyon BRADI2G07090 N 0.000
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.000
Cagra.3126s0019 Capsella grandiflora Cagra.3126s0019 N 0.000
Carubv10015336m.g Capsella rubella Carubv10015336m.g N 0.000
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.000
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.000
Ca_11038 Cicer arietinum Ca_11038 N 0.000
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.000
chr6.CM0045.280.nd Lotus japonicus chr6.CM0045.280.nd N 0.000
Cla016088 Citrullus lanatus Cla016088 N 0.000
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.000
estExt_gwp_gw1.C_410063 Physcomitrella patens estExt_gwp_gw1.C_410063 N 0.000
estExt_gwp_gw1.C_640002 Physcomitrella patens estExt_gwp_gw1.C_640002 N 0.000
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.000
EuGene.0200010100 Micromonas sp RCC299 EuGene.0200010100 N 0.000
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.000
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.000
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.000
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.000
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.000
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.000
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.000
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.000
Gorai.008G062500 Gossypium raimondii Gorai.008G062500 N 0.000
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.000
IGS.gm_9_00317 Chlorella NC64A IGS.gm_9_00317 N 0.000
LPERR08G02000 Leersia perrieri LPERR08G02000 N 0.000
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.000
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.000
MDP0000155077 Malus domestica MDP0000155077 N 0.000
MDP0000202739 Malus domestica MDP0000202739 N 0.000
MDP0000225222 Malus domestica MDP0000225222 N 0.000
mgf001526m Mimulus guttatus mgf001526m N 0.000
mgf014458m Mimulus guttatus mgf014458m N 0.000
mgf015980m Mimulus guttatus mgf015980m I 0.000
OGLUM08G01920 Oryza glumaepatula OGLUM08G01920 N 0.000
OMERI08G01940 Oryza meridionalis OMERI08G01940 N 0.000
ONIVA08G01720 Oryza nivara ONIVA08G01720 N 0.000
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N 0.000
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N 0.000
OS08G0129200 Oryza sativa OS08G0129200 N 0.000
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N 0.000
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.000
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.000
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.000
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.000
Pm020837 Prunus mume Pm020837 I 0.000
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.000
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.000
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.000
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.000
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N 0.000
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N 0.000
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.000
Thhalv10022795m.g Eutrema salsugineum Thhalv10022795m.g N 0.000
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.000
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.000