PRDM4 (Otolemur garnettii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOGAG00000011945 T103521_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 1.000
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 1.000
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 1.000
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000010688 C2H2 ZF 585 607
ENSOGAP00000010688 C2H2 ZF 613 635
ENSOGAP00000010688 C2H2 ZF 641 663
ENSOGAP00000010688 C2H2 ZF 669 691
ENSOGAP00000010688 C2H2 ZF 697 719
ENSOGAP00000010688 C2H2 ZF 725 746

Links

Other C2H2 ZF family TFs
Other Otolemur garnettii TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00206510 Amborella trichopoda AMTR_s00017p00206510 N 0.000
BGIOSGA007226 Oryza indica BGIOSGA007226 N 0.000
Bo4g145670 Brassica oleracea Bo4g145670 I 0.000
Bo7g049880 Brassica oleracea Bo7g049880 I 0.000
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N 0.000
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.000
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.000
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.000
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.000
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.000
Ciclev10002696m.g Citrus clementina Ciclev10002696m.g N 0.000
Cla016088 Citrullus lanatus Cla016088 N 0.000
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.000
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.000
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.000
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.000
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.000
e_gw1.1.536.1 Chlorella vulgaris e_gw1.1.536.1 N 0.000
fgenesh1_pg.1_#_433 Coccomyxa subellipsoidea C169 fgenesh1_pg.1_#_433 N 0.000
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.000
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.000
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.000
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.000
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.000
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.000
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.000
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.000
LPERR02G01370 Leersia perrieri LPERR02G01370 N 0.000
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.000
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.000
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.000
MDP0000121628 Malus domestica MDP0000121628 N 0.000
MDP0000155077 Malus domestica MDP0000155077 N 0.000
MDP0000225222 Malus domestica MDP0000225222 N 0.000
mgf001526m Mimulus guttatus mgf001526m N 0.000
mgf014458m Mimulus guttatus mgf014458m N 0.000
mgf015980m Mimulus guttatus mgf015980m I 0.000
OBART02G01600 Oryza barthii OBART02G01600 N 0.000
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N 0.000
OMERI02G00930 Oryza meridionalis OMERI02G00930 N 0.000
ONIVA02G01490 Oryza nivara ONIVA02G01490 N 0.000
OPUNC02G01060 Oryza punctata OPUNC02G01060 N 0.000
orange1.1g030905m.g Citrus sinensis orange1.1g030905m.g N 0.000
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N 0.000
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N 0.000
OS02G0121100 Oryza sativa OS02G0121100 N 0.000
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N 0.000
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.000
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.000
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.000
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.000
PK03316.1 Cannabis sativa PK03316.1 N 0.000
Pm020837 Prunus mume Pm020837 I 0.000
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.000
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.000
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.000
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.000
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.000
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N 0.000
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N 0.000
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.000
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.000
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.000
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.000
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.000