GM16048 (Drosophila sechellia)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0170964 T116057_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.759 0.791
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.759 0.791
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.759 0.791
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.759 0.791
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.759 0.791
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.759 0.791
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.759 0.791
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.759 0.791
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.759 0.791
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.759 0.791
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0197525 C2H2 ZF 222 244
FBpp0197525 C2H2 ZF 248 270
FBpp0197525 C2H2 ZF 276 298
FBpp0197525 C2H2 ZF 304 325

Links

Other C2H2 ZF family TFs
Other Drosophila sechellia TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I
HMGB13 Arabidopsis thaliana AT4G11080 D
HMGB6 Arabidopsis thaliana AT4G23800 I
Bo1g037180 Brassica oleracea Bo1g037180 I
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I
Bra013731 Brassica rapa Bra013731 I
Bra035256 Brassica rapa Bra035256 I
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I
Carubv10000930m.g Capsella rubella Carubv10000930m.g I
Carubv10007590m.g Capsella rubella Carubv10007590m.g I
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I
Cla011101 Citrullus lanatus Cla011101 I
Cucsa.107270 Cucumis sativus Cucsa.107270 I
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I
GLYMA05G37010 Glycine max GLYMA05G37010 I
GLYMA08G02550 Glycine max GLYMA08G02550 N
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I
GRMZM2G060253 Zea mays GRMZM2G060253 I
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I
Lus10001909.g Linum usitatissimum Lus10001909.g I
Lus10003904.g Linum usitatissimum Lus10003904.g I
Lus10032379.g Linum usitatissimum Lus10032379.g I
Lus10033951.g Linum usitatissimum Lus10033951.g N
MDP0000268093 Malus domestica MDP0000268093 I
mgf015439m Mimulus guttatus mgf015439m I
MTR_8g099305 Medicago truncatula MTR_8g099305 I
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I
Pavir.J07596 Panicum virgatum Pavir.J07596 I
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I
PK10992.1 Cannabis sativa PK10992.1 I
Pm024077 Prunus mume Pm024077 I
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I
Sb04g009610 Sorghum bicolor Sb04g009610 I
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I
TCM_016416 Theobroma cacao TCM_016416 I
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I