Bra007407 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra007407 T248014_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.952 0.800
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.952 0.800
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007407.1-P MADF 37 129

Links

Other MADF family TFs
Other Brassica rapa TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001628 Ricinus communis 29900.m001628 I 0.813
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.952
Bo6g075950 Brassica oleracea Bo6g075950 I 0.951
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.955
Bra003346 Brassica rapa Bra003346 I 0.952
Bra034165 Brassica rapa Bra034165 I 0.816
Bra034866 Brassica rapa Bra034866 I 0.840
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.899
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.899
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.813
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.813
Ca_00394 Cicer arietinum Ca_00394 I 0.861
Ca_19877 Cicer arietinum Ca_19877 I 0.832
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.823
Cla009854 Citrullus lanatus Cla009854 I 0.825
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.854
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.880
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.951
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.907
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.829
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.861
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.877
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.861
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.860
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.857
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.870
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.852
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.848
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.840
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.827
MDP0000301451 Malus domestica MDP0000301451 I 0.906
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.889
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.827
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.823
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.876
PK27986.1 Cannabis sativa PK27986.1 I 0.890
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.852
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.872
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.832
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.846
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.858
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.912
TCM_029695 Theobroma cacao TCM_029695 I 0.859
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.951
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.825
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.863