Pavir.Bb00804 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Bb00804 T258863_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb00804.1.p MADS box 17 64

Links

Other MADS box family TFs
Other Panicum virgatum TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m002042 Ricinus communis 29693.m002042 N 0.708
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.833
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.750
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.750
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.750
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.792
BGIOSGA007600 Oryza indica BGIOSGA007600 N 0.729
BGIOSGA022830 Oryza indica BGIOSGA022830 N 0.708
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.792
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.708
BRADI4G39420 Brachypodium distachyon BRADI4G39420 N 0.708
F775_04223 Aegilops tauschii F775_04223 I 0.792
F775_26069 Aegilops tauschii F775_26069 I 0.708
F775_43210 Aegilops tauschii F775_43210 I 0.792
GRMZM2G459864 Zea mays GRMZM2G459864 N 0.708
GRMZM2G472096 Zea mays GRMZM2G472096 N 0.750
GRMZM2G472100 Zea mays GRMZM2G472100 N 0.854
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.833
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.792
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.792
gw1.81.151.1 Physcomitrella patens gw1.81.151.1 N 0.771
gw1.88.220.1 Physcomitrella patens gw1.88.220.1 N 0.771
LPERR01G40130 Leersia perrieri LPERR01G40130 N 0.792
LPERR02G10390 Leersia perrieri LPERR02G10390 N 0.812
OB01G55160 Oryza brachyantha OB01G55160 N 0.771
OB06G21580 Oryza brachyantha OB06G21580 N 0.708
OB11G21480 Oryza brachyantha OB11G21480 I 0.714
OBART01G45740 Oryza barthii OBART01G45740 N 0.792
OBART02G04930 Oryza barthii OBART02G04930 N 0.759
OBART09G00850 Oryza barthii OBART09G00850 N 0.792
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.792
OGLUM02G04740 Oryza glumaepatula OGLUM02G04740 N 0.729
OGLUM06G14250 Oryza glumaepatula OGLUM06G14250 N 0.708
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.792
OLONG_015132 Oryza longistaminata OLONG_015132 N 0.708
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.792
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.792
OMERI02G05750 Oryza meridionalis OMERI02G05750 N 0.708
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.792
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.792
ONIVA02G05120 Oryza nivara ONIVA02G05120 N 0.729
ONIVA06G15960 Oryza nivara ONIVA06G15960 N 0.708
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.792
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.792
OPUNC02G04080 Oryza punctata OPUNC02G04080 N 0.708
OPUNC06G12720 Oryza punctata OPUNC06G12720 N 0.708
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.792
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.792
ORGLA02G0045500 Oryza glaberrima ORGLA02G0045500 N 0.729
ORGLA06G0273400 Oryza glaberrima ORGLA06G0273400 N 0.708
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.792
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.792
ORUFI02G05030 Oryza rufipogon ORUFI02G05030 N 0.729
ORUFI06G14240 Oryza rufipogon ORUFI06G14240 N 0.708
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.792
OS01G0975800 Oryza sativa OS01G0975800 N 0.792
OS09G0116800 Oryza sativa OS09G0116800 N 0.792
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 1.000
Pavir.Bb00803 Panicum virgatum Pavir.Bb00803 N 0.854
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.708
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.833
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.833
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.729
Sb02g006700 Sorghum bicolor Sb02g006700 N 0.833
Sb02g006710 Sorghum bicolor Sb02g006710 N 0.833
Sb02g006730 Sorghum bicolor Sb02g006730 N 0.750
Sb02g006750 Sorghum bicolor Sb02g006750 N 0.792
Sb06g015640 Sorghum bicolor Sb06g015640 N 0.708
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.708
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.708
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.708
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.833
SELMODRAFT_450772 Selaginella moellendorffii SELMODRAFT_450772 N 0.771
SELMODRAFT_450775 Selaginella moellendorffii SELMODRAFT_450775 N 0.771
SELMODRAFT_450776 Selaginella moellendorffii SELMODRAFT_450776 N 0.771
SELMODRAFT_450777 Selaginella moellendorffii SELMODRAFT_450777 N 0.771
Si019951m.g Setaria italica Si019951m.g I 0.833
Si032189m.g Setaria italica Si032189m.g N 0.833
Si038960m.g Setaria italica Si038960m.g N 0.750
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.792
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.708
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.708
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.792