cassava6704.valid.m1 (Manihot esculenta)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 cassava6704.valid.m1 T261355_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava6704.valid.m1 MBD 4 77

Links

Other MBD family TFs
Other Manihot esculenta TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29841.m002855 Ricinus communis 29841.m002855 N 0.892
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.712
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.767
MBD10 Arabidopsis thaliana AT1G15340 N 0.743
MBD11 Arabidopsis thaliana AT3G15790 N 0.712
Bo8g066360 Brassica oleracea Bo8g066360 N 0.757
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N 0.716
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.743
Bra016665 Brassica rapa Bra016665 N 0.757
Bra027207 Brassica rapa Bra027207 N 0.700
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 0.743
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.743
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.716
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.716
cassava5958.m1 Manihot esculenta cassava5958.m1 N 0.732
Ca_06682 Cicer arietinum Ca_06682 N 0.726
Ca_19192 Cicer arietinum Ca_19192 N 0.784
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.763
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.703
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.741
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N 0.919
Cla012920 Citrullus lanatus Cla012920 N 0.811
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.811
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.976
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.743
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N 0.781
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.730
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.795
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.770
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.770
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.743
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.743
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.808
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.781
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N 0.838
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.824
Lus10002168.g Linum usitatissimum Lus10002168.g N 0.712
Lus10030108.g Linum usitatissimum Lus10030108.g N 0.706
MDP0000152128 Malus domestica MDP0000152128 N 0.730
MDP0000248422 Malus domestica MDP0000248422 N 0.757
MDP0000301302 Malus domestica MDP0000301302 N 0.776
MDP0000375866 Malus domestica MDP0000375866 N 0.716
MDP0000574053 Malus domestica MDP0000574053 N 0.730
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.743
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N 0.918
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.716
PK04144.1 Cannabis sativa PK04144.1 N 0.743
PK24888.1 Cannabis sativa PK24888.1 N 0.784
Pm013666 Prunus mume Pm013666 N 0.746
Pm027560 Prunus mume Pm027560 N 0.726
POPTR_0006s06690 Populus trichocarpa POPTR_0006s06690 N 0.714
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.726
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.811
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.712
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.716
TCM_027169 Theobroma cacao TCM_027169 N 0.861
TCM_038107 Theobroma cacao TCM_038107 N 0.743
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.743
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.833