gene09311-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene09311-v1.0-hybrid T287272_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB52
M00871_2.00 		Arabidopsis thaliana
NNNAMCNDNN
NNHNGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB52 		0.839 0.925
MYB52
M07007_2.00 		Arabidopsis thaliana
TAACGGTNHHD
HDDNACCGTTA		 Dap-seq
OMalley et al.(2016)
MYB52_col_a 		0.839 0.925
MYB105
M07031_2.00 		Arabidopsis thaliana
TAACGGTWWHDDW
WHHDWWACCGTTA		 Dap-seq
OMalley et al.(2016)
MYB105_col_a 		0.762 0.817
MYB105
M07032_2.00 		Arabidopsis thaliana
NNDWHDHTAACGGWWWH
DWWWCCGTTADHDWHNN		 Dap-seq
OMalley et al.(2016)
MYB105_colamp_a 		0.762 0.817
MYB56
M07130_2.00 		Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH		 Dap-seq
OMalley et al.(2016)
MYB56_col_a 		0.722 0.753
MYB56
M07131_2.00 		Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH		 Dap-seq
OMalley et al.(2016)
MYB56_colamp_a 		0.722 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna09311.1-v1.0-hybrid Myb 6 52
mrna09311.1-v1.0-hybrid Myb 58 103

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

383 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N
ALUE_0000365901 Ascaris lumbricoides ALUE_0000365901 N
ALUE_0000448701 Ascaris lumbricoides ALUE_0000448701 N
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I
ANCCAN_19939 Ancylostoma caninum ANCCAN_19939 N
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N
ANCCEY_11391 Ancylostoma ceylanicum ANCCEY_11391 N
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N
ASIM_0000156001 Anisakis simplex ASIM_0000156001 N
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N
ASU_05752 Ascaris suum ASU_05752 N
ASU_05994 Ascaris suum ASU_05994 N
ASU_07820 Ascaris suum ASU_07820 N
ASU_09087 Ascaris suum ASU_09087 N
Bm6643 Brugia malayi Bm6643 N
Bm8632 Brugia malayi Bm8632 N
BTMF_0000229601 Brugia timori BTMF_0000229601 N
BXY_0308800 Bursaphelenchus xylophilus BXY_0308800 N
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I
CBG04066 Caenorhabditis briggsae CBG04066 N
CBG09136 Caenorhabditis briggsae CBG09136 N
CBN25379 Caenorhabditis brenneri CBN25379 I
CGI_10024258 Crassostrea gigas CGI_10024258 N
CJA04355 Caenorhabditis japonica CJA04355 N
CJA19030 Caenorhabditis japonica CJA19030 N
CRE03995 Caenorhabditis remanei CRE03995 N
CRE11852 Caenorhabditis remanei CRE11852 N
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N
DME_0000590001 Dracunculus medinensis DME_0000590001 N
DME_0000779601 Dracunculus medinensis DME_0000779601 N
EEL_0000629001 Elaeophora elaphi EEL_0000629001 N
EFV62220 Trichinella spiralis EFV62220 N
ENSAMXG00000014826 Astyanax mexicanus ENSAMXG00000014826 N
ENSCSAVG00000011755 Ciona savignyi ENSCSAVG00000011755 N
ssrp1a Danio rerio ENSDARG00000037397 I
EVEC_0000079801 Enterobius vermicularis EVEC_0000079801 N
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N
gw1.6.1665.1 Ostreococcus RCC809 gw1.6.1665.1 I
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I
HCOI00417600 Haemonchus contortus HCOI00417600 N
HCOI01420700 Haemonchus contortus HCOI01420700 N
HCOI01550200 Haemonchus contortus HCOI01550200 N
HCOI02106600 Haemonchus contortus HCOI02106600 N
HPBE_0000066401 Heligmosomoides bakeri HPBE_0000066401 N
HPBE_0001796801 Heligmosomoides bakeri HPBE_0001796801 N
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N
L596_g16476 Steinernema carpocapsae L596_g16476 N
L596_g28088 Steinernema carpocapsae L596_g28088 N
L596_g8199 Steinernema carpocapsae L596_g8199 N
L889_g16198 Steinernema feltiae L889_g16198 N
L889_g29516 Steinernema feltiae L889_g29516 N
L889_g9094 Steinernema feltiae L889_g9094 N
L892_g19058 Steinernema scapterisci L892_g19058 N
L892_g23618 Steinernema scapterisci L892_g23618 N
L892_g2503 Steinernema scapterisci L892_g2503 N
L893_g23503 Steinernema glaseri L893_g23503 N
L893_g29974 Steinernema glaseri L893_g29974 N
L898_g23313 Steinernema monticolum L898_g23313 N
L898_g4830 Steinernema monticolum L898_g4830 N
L898_g7743 Steinernema monticolum L898_g7743 N
LOAG_08062 Loa loa LOAG_08062 N
LOAG_14354 Loa loa LOAG_14354 N
LotgiG207546 Lottia gigantea LotgiG207546 N
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N
Minc03634 Meloidogyne incognita Minc03634 N
Minc04648 Meloidogyne incognita Minc04648 N
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N
nAv.1.0.1.g09805 Acanthocheilonema viteae nAv.1.0.1.g09805 N
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N
NECAME_10840 Necator americanus NECAME_10840 N
NECAME_16525 Necator americanus NECAME_16525 N
NECAME_17555 Necator americanus NECAME_17555 N
NECAME_17981 Necator americanus NECAME_17981 N
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N
nOo.2.0.1.g01970 Onchocerca ochengi nOo.2.0.1.g01970 N
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N
OFLC_0000496201 Onchocerca flexuosa OFLC_0000496201 N
PFL0145c Plasmodium falciparum PFL0145c I
PPA02261 Pristionchus pacificus PPA02261 N
PPA06513 Pristionchus pacificus PPA06513 N
Ppa-hmg-1.1 Pristionchus pacificus PPA22767 N
PTRK_0000111400 Parastrongyloides trichosuri PTRK_0000111400 N
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N
RSKR_0000269500 Rhabditophanes kr3021 RSKR_0000269500 N
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N
scaffold593-EXSNAP2012.5 Pristionchus exspectatus scaffold593-EXSNAP2012.5 N
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N
SMUV_0000499601 Syphacia muris SMUV_0000499601 N
SMUV_0000634201 Syphacia muris SMUV_0000634201 N
SPAL_0000986100 Strongyloides papillosus SPAL_0000986100 N
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N
SSTP_0001024100 Strongyloides stercoralis SSTP_0001024100 N
SVE_0294800 Strongyloides venezuelensis SVE_0294800 N
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N
TCNE_0000332201 Toxocara canis TCNE_0000332201 N
TCNE_0001025901 Toxocara canis TCNE_0001025901 N
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N
TriadG64155 Trichoplax adhaerens TriadG64155 I
hmg-1.1 Caenorhabditis elegans WBGene00001971 N
hmg-4 Caenorhabditis elegans WBGene00001974 N
WBGene00237022 Onchocerca volvulus WBGene00237022 N
WBGene00238628 Onchocerca volvulus WBGene00238628 N
WUBG_02390 Wuchereria bancrofti WUBG_02390 N