GMEB1 (Vicugna pacos)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSVPAG00000006781 T321950_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.994 1.000
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.994 1.000
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.994 1.000
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.994 1.000
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.994 0.987
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.994 0.987
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.994 0.974
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.991 0.921
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.991 0.908
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.988 0.750
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.987 0.750
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.986 0.724
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.986 0.724
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.986 0.724
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.986 0.724
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.986 0.724
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.986 0.724
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.986 0.724
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.962 0.632
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000006302 SAND 15 91

Links

Other SAND family TFs
Other Vicugna pacos TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29661.m000926 Ricinus communis 29661.m000926 I 0.000
29706.m001328 Ricinus communis 29706.m001328 I 0.000
29812.m000204 Ricinus communis 29812.m000204 I 0.000
29912.m005376 Ricinus communis 29912.m005376 I 0.000
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.000
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.000
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.000
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.000
Aquca_060_00026 Aquilegia coerulea Aquca_060_00026 I 0.000
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.000
TRB1 Arabidopsis thaliana AT1G49950 D 0.000
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.000
TRB2 Arabidopsis thaliana AT5G67580 D 0.000
Bo1g081300 Brassica oleracea Bo1g081300 I 0.000
Bo3g184590 Brassica oleracea Bo3g184590 I 0.000
Bo5g023860 Brassica oleracea Bo5g023860 I 0.000
Bo5g077530 Brassica oleracea Bo5g077530 I 0.000
Bo6g018740 Brassica oleracea Bo6g018740 I 0.000
Bo6g116150 Brassica oleracea Bo6g116150 I 0.000
Bo8g067280 Brassica oleracea Bo8g067280 I 0.000
Bo8g104830 Brassica oleracea Bo8g104830 I 0.000
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.000
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.000
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.000
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.000
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.000
Bra016037 Brassica rapa Bra016037 I 0.000
Bra016598 Brassica rapa Bra016598 I 0.000
Bra018818 Brassica rapa Bra018818 I 0.000
Bra025967 Brassica rapa Bra025967 I 0.000
Bra029978 Brassica rapa Bra029978 I 0.000
Bra030894 Brassica rapa Bra030894 I 0.000
Bra030992 Brassica rapa Bra030992 I 0.000
Bra039650 Brassica rapa Bra039650 I 0.000
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I 0.000
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.000
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.000
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.000
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.000
Cagra.1262s0035 Capsella grandiflora Cagra.1262s0035 I 0.000
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.000
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.000
Carubv10009763m.g Capsella rubella Carubv10009763m.g I 0.000
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.000
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.000
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.000
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.000
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.000
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.000
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.000
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.000
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.000
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.000
Ca_02232 Cicer arietinum Ca_02232 I 0.000
Ca_08043 Cicer arietinum Ca_08043 I 0.000
Ca_09355 Cicer arietinum Ca_09355 I 0.000
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.000
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.000
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.000
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.000
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.000
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.000
Cla006547 Citrullus lanatus Cla006547 I 0.000
Cla012798 Citrullus lanatus Cla012798 I 0.000
Cla014248 Citrullus lanatus Cla014248 I 0.000
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.000
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.000
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.000
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.000
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.000
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.000
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.000
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I 0.000
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I 0.000
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.000
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.000
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.000
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.000
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.000
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.000
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.000
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.000
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.000
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.000
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.000
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.000
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.000
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.000
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.000
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.000
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.000
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.000
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.000
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.000
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.000
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.000
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.000
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.000
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.000
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.000
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.000
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.000
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.000
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.000
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.000
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.000
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.000
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.000
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.000
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.000
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.000
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.000
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.000
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.000
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.000
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.000
MDP0000234807 Malus domestica MDP0000234807 I 0.000
MDP0000239354 Malus domestica MDP0000239354 I 0.000
MDP0000265359 Malus domestica MDP0000265359 I 0.000
mgf000125m Mimulus guttatus mgf000125m I 0.000
mgf004823m Mimulus guttatus mgf004823m I 0.000
mgf007122m Mimulus guttatus mgf007122m I 0.000
mgf009594m Mimulus guttatus mgf009594m I 0.000
mgf010975m Mimulus guttatus mgf010975m I 0.000
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.000
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.000
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.000
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.000
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.000
MTR_8g018410 Medicago truncatula MTR_8g018410 I 0.000
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.000
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.000
OB01G37330 Oryza brachyantha OB01G37330 I 0.000
OBART01G28260 Oryza barthii OBART01G28260 I 0.000
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.000
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.000
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.000
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.000
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.000
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.000
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.000
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.000
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.000
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.000
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.000
OS01G0708000 Oryza sativa OS01G0708000 D 0.000
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.000
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.000
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.000
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.000
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.000
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.000
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.000
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.000
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.000
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.000
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.000
PK00568.1 Cannabis sativa PK00568.1 I 0.000
PK06103.1 Cannabis sativa PK06103.1 D 0.000
PK19870.1 Cannabis sativa PK19870.1 I 0.000
Pm002374 Prunus mume Pm002374 I 0.000
Pm013309 Prunus mume Pm013309 I 0.000
Pm021139 Prunus mume Pm021139 I 0.000
Pm027209 Prunus mume Pm027209 I 0.000
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.000
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.000
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.000
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.000
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.000
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.000
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.000
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.000
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.000
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.000
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.000
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.000
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.000
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.000
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.000
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.000
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I 0.000
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I 0.000
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.000
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.000
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.000
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.000
Si002403m.g Setaria italica Si002403m.g I 0.000
Si002467m.g Setaria italica Si002467m.g I 0.000
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I 0.000
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.000
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.000
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.000
TCM_000807 Theobroma cacao TCM_000807 I 0.000
TCM_007242 Theobroma cacao TCM_007242 I 0.000
TCM_029078 Theobroma cacao TCM_029078 I 0.000
TCM_042744 Theobroma cacao TCM_042744 I 0.000
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.000
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.000
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.000
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.000
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.000
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.000
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I 0.000
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.000
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I 0.000
TRIUR3_08672 Triticum urartu TRIUR3_08672 I 0.000
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.000
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.000
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.000
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.000