Phatr3_J39045 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J39045 T331914_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J39045.p1 Sox 270 292
Phatr3_J39045.p1 Sox 308 367

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.424
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.477
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.479
MAM_05902 Metarhizium album MAM_05902 N 0.429
PAS_chr1-1_0442 Komagataella pastoris PAS_chr1-1_0442 N 0.430
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.433
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.464
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.453
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.439
Phatr3_J48554 Phaeodactylum tricornutum Phatr3_J48554 N 0.578
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.425
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.467
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.428
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.461
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.436
Thaps11719 Thalassiosira pseudonana Thaps11719 N 0.460
Thaps12024 Thalassiosira pseudonana Thaps12024 N 0.447
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.491
Thaps23446 Thalassiosira pseudonana Thaps23446 N 0.421
Thaps24755 Thalassiosira pseudonana Thaps24755 N 0.456
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.461
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.466
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.480
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.480
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.488
Thaps8895 Thalassiosira pseudonana Thaps8895 N 0.460
Thaps8898 Thalassiosira pseudonana Thaps8898 N 0.460
Thapsdraft1840 Thalassiosira pseudonana Thapsdraft1840 N 0.492
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.460
XP_002490100.1 Pichia pastoris XP_002490100.1 N 0.430