Cagra.0799s0022 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0799s0022 T007714_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.803 1.000
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.803 1.000
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.803 1.000
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.724 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.700 0.837
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.683 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0799s0022.1.p AP2 40 91

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2D Arabidopsis thaliana AT1G75490 D 0.803
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.775
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.737
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.778
mgf024545m Mimulus guttatus mgf024545m I 0.776
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.000
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.803
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.803
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.784
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.705
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.726
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.786
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.773
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.775
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.784
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.769
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.753
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.741
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.753
MDP0000141335 Malus domestica MDP0000141335 I 0.768
MDP0000250924 Malus domestica MDP0000250924 I 0.774
MDP0000250927 Malus domestica MDP0000250927 I 0.746
MDP0000295902 Malus domestica MDP0000295902 I 0.768
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.784
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.759
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.803
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.732
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.765
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.713
Bo2g083920 Brassica oleracea Bo2g083920 I 0.795
Bo6g086320 Brassica oleracea Bo6g086320 I 0.790
Bo6g119660 Brassica oleracea Bo6g119660 I 0.803
Bra003752 Brassica rapa Bra003752 I 0.790
Bra008200 Brassica rapa Bra008200 I 0.795
Bra015840 Brassica rapa Bra015840 I 0.803
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.803
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.765
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.765
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.796
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.796
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.000
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.765
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.783
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.782
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.780
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.770
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.693
TCM_026121 Theobroma cacao TCM_026121 I 0.707
TCM_034132 Theobroma cacao TCM_034132 I 0.770
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.780
Ca_10770 Cicer arietinum Ca_10770 I 0.765
Cla021113 Citrullus lanatus Cla021113 I 0.778
Cla022803 Citrullus lanatus Cla022803 I 0.737
Pm006274 Prunus mume Pm006274 I 0.778
30170.m014115 Ricinus communis 30170.m014115 I 0.784
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.709