Ciclev10029464m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10029464m.g T142794_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.801 0.804
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.762 0.783
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.739
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10029464m C2H2 ZF 32 54
Ciclev10029464m C2H2 ZF 85 107

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

375 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT1 Arabidopsis thaliana AT1G02030 D 0.000
ZAT10 Arabidopsis thaliana AT1G27730 D 0.000
ZAT4 Arabidopsis thaliana AT2G45120 D 0.000
AZF2 Arabidopsis thaliana AT3G19580 D 0.000
ZAT9 Arabidopsis thaliana AT3G60580 D 0.000
ZAT6 Arabidopsis thaliana AT5G04340 D 0.000
AZF1 Arabidopsis thaliana AT5G67450 D 0.000
AC211702.2_FG002 Zea mays AC211702.2_FG002 I 0.000
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.000
AZF3 Arabidopsis thaliana AT5G43170 I 0.000
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.000
Bo1g081350 Brassica oleracea Bo1g081350 I 0.000
Bo1g113530 Brassica oleracea Bo1g113530 I 0.000
Bo2g168030 Brassica oleracea Bo2g168030 I 0.000
Bo3g037560 Brassica oleracea Bo3g037560 I 0.000
Bo3g142840 Brassica oleracea Bo3g142840 I 0.000
Bo4g104940 Brassica oleracea Bo4g104940 I 0.000
Bo4g195370 Brassica oleracea Bo4g195370 I 0.000
Bo5g113850 Brassica oleracea Bo5g113850 I 0.000
Bo6g077190 Brassica oleracea Bo6g077190 I 0.000
Bo7g048650 Brassica oleracea Bo7g048650 I 0.000
Bo7g065200 Brassica oleracea Bo7g065200 I 0.000
Bo8g095300 Brassica oleracea Bo8g095300 I 0.000
Bo9g019120 Brassica oleracea Bo9g019120 I 0.000
Bo9g181170 Brassica oleracea Bo9g181170 I 0.000
Bra000372 Brassica rapa Bra000372 I 0.000
Bra003422 Brassica rapa Bra003422 I 0.000
Bra007545 Brassica rapa Bra007545 I 0.000
Bra009464 Brassica rapa Bra009464 I 0.000
Bra010922 Brassica rapa Bra010922 I 0.000
Bra012914 Brassica rapa Bra012914 I 0.000
Bra014483 Brassica rapa Bra014483 I 0.000
Bra018817 Brassica rapa Bra018817 I 0.000
Bra022436 Brassica rapa Bra022436 I 0.000
Bra029985 Brassica rapa Bra029985 I 0.000
Bra031834 Brassica rapa Bra031834 I 0.000
Bra033666 Brassica rapa Bra033666 I 0.000
Bra037845 Brassica rapa Bra037845 I 0.000
Bra038219 Brassica rapa Bra038219 I 0.000
Bra040325 Brassica rapa Bra040325 I 0.000
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.000
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.000
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.000
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.000
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.000
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.000
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.000
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.000
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.000
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.000
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.763
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.000
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.000
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.000
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.000
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.000
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.000
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.000
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.000
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.000
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.000
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.000
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.000
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.000
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.000
MTR_2g096540 Medicago truncatula MTR_2g096540 I 0.765
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.000
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.000
OB03G42170 Oryza brachyantha OB03G42170 I 0.000
OB04G28040 Oryza brachyantha OB04G28040 I 0.000
OBART04G21020 Oryza barthii OBART04G21020 I 0.000
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.000
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.000
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.000
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.000
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.000
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.000
OS04G0552700 Oryza sativa OS04G0552700 I 0.000
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.000
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.760
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.000
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.000
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.000
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.000
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.000
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.000
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.000
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.000
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.000
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.000
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.000
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.000
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.000
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.000
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.000
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.000
Si010615m.g Setaria italica Si010615m.g I 0.000
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.000
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.000
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.000
TCM_000780 Theobroma cacao TCM_000780 I 0.000
TCM_007214 Theobroma cacao TCM_007214 I 0.000
TCM_014903 Theobroma cacao TCM_014903 I 0.000
TCM_034720 Theobroma cacao TCM_034720 I 0.000
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.000
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.000
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.000
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.000
Ca_01586 Cicer arietinum Ca_01586 I 0.000
Ca_18364 Cicer arietinum Ca_18364 I 0.000
Ca_23672 Cicer arietinum Ca_23672 I 0.000
Cla001400 Citrullus lanatus Cla001400 I 0.000
Cla022966 Citrullus lanatus Cla022966 I 0.000
Pm005390 Prunus mume Pm005390 I 0.000
Pm021284 Prunus mume Pm021284 I 0.000
28152.m000908 Ricinus communis 28152.m000908 I 0.760
30147.m014242 Ricinus communis 30147.m014242 I 0.000
30170.m013751 Ricinus communis 30170.m013751 I 0.000
30174.m008818 Ricinus communis 30174.m008818 I 0.000
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.760
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.000
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.000
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.000
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.000
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.000
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.760
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.000
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.000
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.000
mgf006006m Mimulus guttatus mgf006006m I 0.000
mgf017082m Mimulus guttatus mgf017082m I 0.000
mgf021094m Mimulus guttatus mgf021094m I 0.000
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.000
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.000
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.000
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.000
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.000
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.000
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.000
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.000
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.000
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.000
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.000
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.000
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.000
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.000
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.000
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.000
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.000
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.000
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.000
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.000
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.000
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.000
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.000
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.000
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.000
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.000
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.760
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.000
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.000
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.000
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.000
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.760
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.000
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.000
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.000
MDP0000198015 Malus domestica MDP0000198015 I 0.000
MDP0000319225 Malus domestica MDP0000319225 I 0.000
MDP0000573176 Malus domestica MDP0000573176 I 0.000
MDP0000762756 Malus domestica MDP0000762756 I 0.000
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.000
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.000
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.000
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.000
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.000
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.000
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.000
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.000
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.000
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.000
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.000
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.000
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.000
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.000
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.000
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.000
PK10188.1 Cannabis sativa PK10188.1 I 0.000
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.000
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.000
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.000
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.000