fgenesh2_pg.scaffold_129000050 (Branchiostoma floridae)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 fgenesh2_pg.scaffold_129000050 T189330_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Foxn4
M01011_2.00 		Mus musculus
NNNVACGCNN
NNGCGTBNNN		 PBM
Nakagawa et al.(2013)
Foxn4 		0.840 0.837
FOXN1
M10531_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$WHN_B 		0.763 0.826
Foxn1
M01010_2.00 		Mus musculus
NAHRCNNNNN
NNNNNGYDTN		 PBM
Nakagawa et al.(2013)
Foxn1 		0.763 0.814
jumu
M01012_2.00 		Drosophila melanogaster
NNNNVACGCN
NGCGTBNNNN		 PBM
Nakagawa et al.(2013)
Jumeau 		0.739 0.686
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_129000050 Forkhead 373 463

Links

Other Forkhead family TFs
Other Branchiostoma floridae TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL8 Arabidopsis thaliana AT1G02065 D
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I
BGIOSGA007655 Oryza indica BGIOSGA007655 I
BGIOSGA017275 Oryza indica BGIOSGA017275 I
SPL10 Oryza indica BGIOSGA023408 I
Bo5g001290 Brassica oleracea Bo5g001290 I
Bo8g118210 Brassica oleracea Bo8g118210 I
Bra032662 Brassica rapa Bra032662 I
Bra033221 Brassica rapa Bra033221 I
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I
GLYMA01G15258 Glycine max GLYMA01G15258 I
GLYMA03G27180 Glycine max GLYMA03G27180 I
GLYMA07G14610 Glycine max GLYMA07G14610 I
GLYMA13G31090 Glycine max GLYMA13G31090 I
GLYMA15G08270 Glycine max GLYMA15G08270 I
GRMZM2G036297 Zea mays GRMZM2G036297 I
GRMZM2G058588 Zea mays GRMZM2G058588 I
GRMZM2G101499 Zea mays GRMZM2G101499 I
GRMZM2G111136 Zea mays GRMZM2G111136 I
GRMZM2G168229 Zea mays GRMZM2G168229 I
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I
LPERR02G05080 Leersia perrieri LPERR02G05080 I
LPERR04G23580 Leersia perrieri LPERR04G23580 I
LPERR06G19480 Leersia perrieri LPERR06G19480 I
MLOC_13032 Hordeum vulgare MLOC_13032 I
MLOC_326 Hordeum vulgare MLOC_326 I
MLOC_51510 Hordeum vulgare MLOC_51510 I
MLOC_57503 Hordeum vulgare MLOC_57503 I
MTR_8g005960 Medicago truncatula MTR_8g005960 I
OB02G15090 Oryza brachyantha OB02G15090 I
OB04G34990 Oryza brachyantha OB04G34990 I
OB06G31100 Oryza brachyantha OB06G31100 I
OBART04G27990 Oryza barthii OBART04G27990 I
OBART06G23500 Oryza barthii OBART06G23500 I
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I
OLONG_021174 Oryza longistaminata OLONG_021174 I
OMERI02G06720 Oryza meridionalis OMERI02G06720 I
OMERI04G23390 Oryza meridionalis OMERI04G23390 I
OMERI06G23430 Oryza meridionalis OMERI06G23430 I
ONIVA01G24470 Oryza nivara ONIVA01G24470 I
ONIVA04G26660 Oryza nivara ONIVA04G26660 I
OPUNC02G05050 Oryza punctata OPUNC02G05050 I
OPUNC04G25460 Oryza punctata OPUNC04G25460 I
OPUNC06G21190 Oryza punctata OPUNC06G21190 I
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I
SPL5 Oryza sativa OS02G0177300 I
SPL8 Oryza sativa OS04G0656500 I
SPL10 Oryza sativa OS06G0659100 I
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I
Sb04g005180 Sorghum bicolor Sb04g005180 I
Sb06g031290 Sorghum bicolor Sb06g031290 I
Sb10g026200 Sorghum bicolor Sb10g026200 I
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I
Si006559m.g Setaria italica Si006559m.g I
Si017338m.g Setaria italica Si017338m.g I
Si022315m.g Setaria italica Si022315m.g I
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I
TCM_005622 Theobroma cacao TCM_005622 I
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I
TRIUR3_23102 Triticum urartu TRIUR3_23102 I
TRIUR3_34351 Triticum urartu TRIUR3_34351 I
SPL3 Vitis vinifera VIT_10s0003g00050 I
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I
SPL8 Vitis vinifera VIT_15s0021g02300 I
Ca_18942 Cicer arietinum Ca_18942 I
Cla006776 Citrullus lanatus Cla006776 I
Cla020006 Citrullus lanatus Cla020006 I
Pm017777 Prunus mume Pm017777 I
30174.m008803 Ricinus communis 30174.m008803 I
30190.m011329 Ricinus communis 30190.m011329 I
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I
cassava19899.m1 Manihot esculenta cassava19899.m1 I
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I
mgf011616m Mimulus guttatus mgf011616m I
mgf016085m Mimulus guttatus mgf016085m I
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I
Carubv10009506m.g Capsella rubella Carubv10009506m.g I
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I
Lus10028181.g Linum usitatissimum Lus10028181.g I
Lus10042882.g Linum usitatissimum Lus10042882.g I
MDP0000803116 Malus domestica MDP0000803116 I
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I
PK25779.1 Cannabis sativa PK25779.1 I
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I
GLYMA11G08905 Glycine max GLYMA11G08905 N
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N