L892_g28094 (Steinernema scapterisci)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 L892_g28094 T234780_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.641 0.719
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.637 0.614
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.637 0.614
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.637 0.614
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.637 0.614
Dbx2
M00499_2.00 		Mus musculus
NNDTNNN
NNNAHNN		 PBM
Berger et al.(2008)
Dbx2_3487 		0.621 0.456
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.620 0.632
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.620 0.632
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.620 0.632
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.620 0.632
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.620 0.632
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.620 0.632
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.620 0.632
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.620 0.632
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.620 0.632
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.620 0.632
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.620 0.632
si:dkey-43p13.5
M02082_2.00 		Danio rerio
DNWNWWNWNH
DNWNWWNWNH		 PBM
Weirauch et al.(2014)
pTH6636 		0.607 0.386
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.605 0.614
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.605 0.614
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.605 0.596
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.605 0.596
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.605 0.596
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.605 0.596
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.605 0.596
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.605 0.596
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.605 0.596
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.605 0.596
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.605 0.596
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.605 0.596
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.605 0.596
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.605 0.596
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.605 0.596
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.605 0.596
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.605 0.596
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.605 0.596
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.605 0.596
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.605 0.596
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.605 0.596
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.605 0.579
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.605 0.579
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.605 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L892_g28094.t1 Homeodomain 364 420

Links

Other Homeodomain family TFs
Other Steinernema scapterisci TFs

354 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.000
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.000
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.000
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.000
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.000
Cucsa.308180 Cucumis sativus Cucsa.308180 N 0.000
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.000
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.000
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.000
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.000
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.000
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N 0.000
Eucgr.G03258 Eucalyptus grandis Eucgr.G03258 N 0.000
evm.TU.supercontig_197.7 Carica papaya evm.TU.supercontig_197.7 N 0.000
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.000
gene14438-v1.0-hybrid Fragaria vesca gene14438-v1.0-hybrid N 0.000
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.000
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.000
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.000
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.000
Lus10019773.g Linum usitatissimum Lus10019773.g N 0.000
Lus10024177.g Linum usitatissimum Lus10024177.g N 0.000
Lus10039562.g Linum usitatissimum Lus10039562.g N 0.000
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.000
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.000
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.000
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.000
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.000
PK02707.1 Cannabis sativa PK02707.1 N 0.000
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.000
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.000
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.000
Bra014251 Brassica rapa Bra014251 N 0.000
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.000
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.000
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.000
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.000
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.000
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.000
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.000
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.000
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.000
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.000
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.000
PRUPE_ppa005439mg Prunus persica PRUPE_ppa005439mg N 0.000
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.000
SCL3 Arabidopsis thaliana AT1G50420 N 0.000
TCM_040833 Theobroma cacao TCM_040833 N 0.000
TCM_042392 Theobroma cacao TCM_042392 N 0.000
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.000
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.000
Ca_11133 Cicer arietinum Ca_11133 N 0.000
Ca_27441 Cicer arietinum Ca_27441 N 0.000
Cla006433 Citrullus lanatus Cla006433 N 0.000
Cla020893 Citrullus lanatus Cla020893 N 0.000
Pm012190 Prunus mume Pm012190 N 0.000
Pm016466 Prunus mume Pm016466 N 0.000
Pm029840 Prunus mume Pm029840 N 0.000
30024.m001746 Ricinus communis 30024.m001746 N 0.000
30131.m007244 Ricinus communis 30131.m007244 N 0.000
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.000