PGSC0003DMG400004138 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400004138 T245810_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400010597 LOB 13 111

Links

Other LOB family TFs
Other Solanum tuberosum TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.717
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.869
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.848
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.818
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.818
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.879
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.808
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.778
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.808
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.869
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.798
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.818
OB05G11740 Oryza brachyantha OB05G11740 I 0.788
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.798
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.798
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.818
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.828
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.828
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.838
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.768
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.889
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.808
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.818
TCM_041094 Theobroma cacao TCM_041094 I 0.828
TCM_043081 Theobroma cacao TCM_043081 I 0.838
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.808
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.848
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.838
Ca_04287 Cicer arietinum Ca_04287 I 0.869
Ca_14605 Cicer arietinum Ca_14605 I 0.838
Cla000556 Citrullus lanatus Cla000556 I 0.798
Cla020379 Citrullus lanatus Cla020379 I 0.838
Pm000938 Prunus mume Pm000938 I 0.808
Pm018585 Prunus mume Pm018585 I 0.838
30111.m000703 Ricinus communis 30111.m000703 I 0.828
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.828
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.859
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.828
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.778
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.838
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.747
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.848
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.828
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.818
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.808
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.848
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.808
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.828
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.859
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.788
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.758
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.758
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.859
MDP0000123013 Malus domestica MDP0000123013 I 0.838
MDP0000151784 Malus domestica MDP0000151784 I 0.838
MDP0000218986 Malus domestica MDP0000218986 I 0.798
MDP0000318244 Malus domestica MDP0000318244 I 0.798
MDP0000319331 Malus domestica MDP0000319331 I 0.808
MDP0000822986 Malus domestica MDP0000822986 I 0.808
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.848
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.747
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.838
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.758
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.758
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.828
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.838
PK17019.1 Cannabis sativa PK17019.1 I 0.735
PK23777.1 Cannabis sativa PK23777.1 I 0.848
PK27389.1 Cannabis sativa PK27389.1 I 0.828
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.879
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.798
LBD11 Arabidopsis thaliana AT2G28500 N 0.798
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.717
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.717
Bo01039s010 Brassica oleracea Bo01039s010 N 0.808
Bo3g040220 Brassica oleracea Bo3g040220 N 0.778
Bo4g165420 Brassica oleracea Bo4g165420 N 0.818
Bo5g008590 Brassica oleracea Bo5g008590 N 0.808
Bo8g112780 Brassica oleracea Bo8g112780 N 0.788
Bra000491 Brassica rapa Bra000491 N 0.778
Bra011942 Brassica rapa Bra011942 N 0.798
Bra018675 Brassica rapa Bra018675 N 0.808
Bra031599 Brassica rapa Bra031599 N 0.798
Bra035698 Brassica rapa Bra035698 N 0.818
F775_02335 Aegilops tauschii F775_02335 N 0.707
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.808
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.808
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.828
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.727
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.717
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.768
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.717
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.717
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.778
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.798
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.737
OB03G23270 Oryza brachyantha OB03G23270 N 0.707
OBART03G13260 Oryza barthii OBART03G13260 N 0.717
OBART05G01640 Oryza barthii OBART05G01640 N 0.788
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.717
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.717
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.717
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.717
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.717
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.778
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.717
OS03G0287400 Oryza sativa OS03G0287400 N 0.717
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.727
Si024430m.g Setaria italica Si024430m.g N 0.737
Si037280m.g Setaria italica Si037280m.g N 0.707
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.970
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.739
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.737
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.737
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.737
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.707
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.707
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.707
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.737
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.747
Ca_02507 Cicer arietinum Ca_02507 N 0.788
Cla005133 Citrullus lanatus Cla005133 N 0.778
Cla005134 Citrullus lanatus Cla005134 N 0.808
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.787
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.828
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.838
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.727
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.778
mgf015666m Mimulus guttatus mgf015666m N 0.798
mgf019622m Mimulus guttatus mgf019622m N 0.838
mgf022524m Mimulus guttatus mgf022524m N 0.879
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.768
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.818
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.818
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.808
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.808
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.818
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.808
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.828
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.738
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.828
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.788
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.788
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.792
MDP0000879799 Malus domestica MDP0000879799 N 0.808
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.727
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.727
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.828
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.798
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.808