PGSC0003DMG400025384 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400025384 T245834_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400065297 LOB 58 156

Links

Other LOB family TFs
Other Solanum tuberosum TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.789
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.768
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.737
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.768
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.747
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.778
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.768
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.727
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.768
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.707
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.758
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.758
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.737
OB05G11740 Oryza brachyantha OB05G11740 I 0.737
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.789
OS03G0659700 Oryza sativa OS03G0659700 I 0.723
OS05G0123000 Oryza sativa OS05G0123000 I 0.789
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.737
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.846
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.750
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.768
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.778
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.768
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.747
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.745
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.717
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.798
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.848
TCM_041094 Theobroma cacao TCM_041094 I 0.758
TCM_043081 Theobroma cacao TCM_043081 I 0.768
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.707
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.747
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.768
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.778
Ca_04287 Cicer arietinum Ca_04287 I 0.758
Ca_14605 Cicer arietinum Ca_14605 I 0.737
Cla000556 Citrullus lanatus Cla000556 I 0.727
Cla020379 Citrullus lanatus Cla020379 I 0.747
Pm000938 Prunus mume Pm000938 I 0.758
Pm018585 Prunus mume Pm018585 I 0.737
30111.m000703 Ricinus communis 30111.m000703 I 0.758
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.768
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.758
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.768
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.727
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.768
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.707
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.768
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.758
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.758
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.821
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.778
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.747
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.747
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.737
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.768
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.727
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.737
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.737
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.737
MDP0000123013 Malus domestica MDP0000123013 I 0.727
MDP0000151784 Malus domestica MDP0000151784 I 0.727
MDP0000218986 Malus domestica MDP0000218986 I 0.758
MDP0000318244 Malus domestica MDP0000318244 I 0.758
MDP0000319331 Malus domestica MDP0000319331 I 0.768
MDP0000822986 Malus domestica MDP0000822986 I 0.737
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.768
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.707
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.768
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.707
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.707
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.778
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.778
PK17019.1 Cannabis sativa PK17019.1 I 0.824
PK23777.1 Cannabis sativa PK23777.1 I 0.758
PK27389.1 Cannabis sativa PK27389.1 I 0.758
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.778
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.750
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.815
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.747
LBD11 Arabidopsis thaliana AT2G28500 N 0.737
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.707
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.707
Bo01039s010 Brassica oleracea Bo01039s010 N 0.737
Bo3g040220 Brassica oleracea Bo3g040220 N 0.707
Bo4g165420 Brassica oleracea Bo4g165420 N 0.727
Bo5g008590 Brassica oleracea Bo5g008590 N 0.707
Bra000491 Brassica rapa Bra000491 N 0.717
Bra011942 Brassica rapa Bra011942 N 0.747
Bra018675 Brassica rapa Bra018675 N 0.707
Bra035698 Brassica rapa Bra035698 N 0.727
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.737
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.737
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.737
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.707
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.727
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.727
OBART03G13260 Oryza barthii OBART03G13260 N 0.707
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.707
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.707
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.750
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.707
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.707
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.780
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.707
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.727
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.707
OS03G0287400 Oryza sativa OS03G0287400 N 0.707
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.707
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.739
Ca_02507 Cicer arietinum Ca_02507 N 0.758
Cla005134 Citrullus lanatus Cla005134 N 0.707
cassava4159.m1 Manihot esculenta cassava4159.m1 N 0.712
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.717
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.747
mgf015666m Mimulus guttatus mgf015666m N 0.778
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.727
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.747
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.737
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.758
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.737
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.758
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.737
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.717
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.717
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.758
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.747
MDP0000879799 Malus domestica MDP0000879799 N 0.737
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.707
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.707
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.727
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.737
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.737