Cla002288 (Citrullus lanatus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cla002288 T250126_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.829 0.625
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.829 0.625
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla002288 MADF 30 109

Links

Other MADF family TFs
Other Citrullus lanatus TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.829
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.825
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.866
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.860
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.876
Ca_00394 Cicer arietinum Ca_00394 I 0.841
Ca_19877 Cicer arietinum Ca_19877 I 0.882
Cla009854 Citrullus lanatus Cla009854 I 0.827
Cla019967 Citrullus lanatus Cla019967 I 0.831
29900.m001628 Ricinus communis 29900.m001628 I 0.892
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.892
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.892
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.831
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.831
mgf000047m Mimulus guttatus mgf000047m I 0.818
mgf006505m Mimulus guttatus mgf006505m I 0.828
TCM_029695 Theobroma cacao TCM_029695 I 0.841
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.829
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.829
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.829
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.841
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.863
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.864
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.827
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.840
MDP0000301451 Malus domestica MDP0000301451 I 0.829
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.841
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.835
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.835
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.840
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.832
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.882
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.841
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.910
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.875
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.902
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.910
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.898
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.835
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.841
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.834
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.891
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.834
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.827
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.819
Bra003346 Brassica rapa Bra003346 I 0.829
Bo6g075950 Brassica oleracea Bo6g075950 I 0.829
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.835
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.835
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.835
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.816
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.848
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.817
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.834
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.866
OS05G0560600 Oryza sativa OS05G0560600 I 0.835
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.835
Si022565m.g Setaria italica Si022565m.g I 0.835
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.835
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.835
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.835
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.835
OBART05G25610 Oryza barthii OBART05G25610 I 0.835
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.959
Ca_02494 Cicer arietinum Ca_02494 N 0.812
mgf001239m Mimulus guttatus mgf001239m N 0.816