AGL55 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT1G60920 T252854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00		 Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G60920.1 MADS box 12 64

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003368 Ricinus communis 29794.m003368 N
PK05603.1 Cannabis sativa PK05603.1 N
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N
MDP0000315125 Malus domestica MDP0000315125 N
MDP0000135483 Malus domestica MDP0000135483 N
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N
Carubv10016920m.g Capsella rubella Carubv10016920m.g N
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N
Pm005208 Prunus mume Pm005208 N
Pm005207 Prunus mume Pm005207 N
Ca_14896 Cicer arietinum Ca_14896 N
SIGC Vitis vinifera VIT_04s0008g00600 N
TCM_037242 Theobroma cacao TCM_037242 N
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N
MTR_1g007370 Medicago truncatula MTR_1g007370 N
GLYMA17G26620 Glycine max GLYMA17G26620 N
GLYMA14G22170 Glycine max GLYMA14G22170 N
Bra014857 Brassica rapa Bra014857 N
Bo4g120510 Brassica oleracea Bo4g120510 N
SIGC Arabidopsis thaliana AT3G53920 N
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N