Bra041022 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra041022 T253380_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra041022.1-P MADS box 10 55

Links

Other MADS box family TFs
Other Brassica rapa TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.733
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.733
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.711
MDP0000846004 Malus domestica MDP0000846004 I 0.711
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.711
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.711
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.711
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.705
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.711
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.711
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.711
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.711
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.711
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.711
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.711
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.778
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.778
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.778
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.733
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.778
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.711
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.711
Bo2g104810 Brassica oleracea Bo2g104810 I 0.778
Bo5g145000 Brassica oleracea Bo5g145000 I 0.978
Bo9g078450 Brassica oleracea Bo9g078450 I 0.778
Bra018490 Brassica rapa Bra018490 I 0.800
Bra029469 Brassica rapa Bra029469 I 0.778
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.733
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.756
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.778
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.733
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.756
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.711
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.733
TCM_026842 Theobroma cacao TCM_026842 I 0.756
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.711
Ca_06495 Cicer arietinum Ca_06495 I 0.711
Ca_08934 Cicer arietinum Ca_08934 I 0.733
Ca_13275 Cicer arietinum Ca_13275 I 0.778
30199.m000879 Ricinus communis 30199.m000879 I 0.711
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.708
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.711
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.711
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.733