AFAF006302 (Anopheles farauti)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 AFAF006302 T259489_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.957 0.957
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.957 0.957
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.913 0.913
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.913 0.913
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.913 0.913
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.913 0.913
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.913 0.913
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.913 0.913
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.913 0.913
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.913 0.913
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.913 0.913
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.913 0.913
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.913 0.913
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.913 0.913
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.913 0.913
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.913 0.913
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.913 0.913
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.913 0.913
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.913 0.913
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.913 0.913
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.913 0.913
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.913 0.913
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.913 0.913
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.913 0.913
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.913 0.913
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AFAF006302-PA MADS box 151 173

Links

Other MADS box family TFs
Other Anopheles farauti TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.000
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.000
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.000
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.000
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.000
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.000
Ca_13295 Cicer arietinum Ca_13295 I 0.000
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.000
Pm014329 Prunus mume Pm014329 I 0.000
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.000
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.000
MDP0000669451 Malus domestica MDP0000669451 I 0.000
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.000
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.000
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.000
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.000
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.000
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.000
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.000
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.000
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.000
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.000
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.000
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.000
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.000
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.000
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.000
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.000
MDP0000237978 Malus domestica MDP0000237978 N 0.000
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.000
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.000
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.000
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.000
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.000
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.000
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.000
PK14700.1 Cannabis sativa PK14700.1 N 0.000
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.000
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.000
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.000
GAI Arabidopsis thaliana AT1G14920 N 0.000
Bo7g078550 Brassica oleracea Bo7g078550 N 0.000
Bo9g070200 Brassica oleracea Bo9g070200 N 0.000
Bra017443 Brassica rapa Bra017443 N 0.000
Bra024875 Brassica rapa Bra024875 N 0.000
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.000
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.000
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.000
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.000
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.000
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.000
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.000
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.000
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.000
mgf025772m Mimulus guttatus mgf025772m N 0.000
TCM_010965 Theobroma cacao TCM_010965 N 0.000
TCM_019165 Theobroma cacao TCM_019165 N 0.000
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.000
Ca_05046 Cicer arietinum Ca_05046 N 0.000
Cla003996 Citrullus lanatus Cla003996 N 0.000
Cla020062 Citrullus lanatus Cla020062 N 0.000
Pm006304 Prunus mume Pm006304 N 0.000
28677.m000055 Ricinus communis 28677.m000055 N 0.000
29692.m000540 Ricinus communis 29692.m000540 N 0.000
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.000
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.000
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.000
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.000
mgf008289m Mimulus guttatus mgf008289m N 0.000