PK04144.1 (Cannabis sativa)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 PK04144.1 T261657_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PK04144.1 MBD 18 111

Links

Other MBD family TFs
Other Cannabis sativa TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.716
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.865
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N 0.703
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.810
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N 0.703
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.828
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.743
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 0.743
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.730
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.795
Cucsa.295070 Cucumis sativus Cucsa.295070 N 0.726
Gorai.009G016600 Gossypium raimondii Gorai.009G016600 N 0.757
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.716
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.743
cassava5958.m1 Manihot esculenta cassava5958.m1 N 0.750
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.797
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.797
29841.m002855 Ricinus communis 29841.m002855 N 0.703
Pm027560 Prunus mume Pm027560 N 0.863
Cla016961 Citrullus lanatus Cla016961 N 0.726
Cla012920 Citrullus lanatus Cla012920 N 0.716
MDP0000574053 Malus domestica MDP0000574053 N 0.878
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.851
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.780
PK24888.1 Cannabis sativa PK24888.1 N 0.703
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.730
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.795
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N 0.767
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N 0.718
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N 0.712
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.838
Cla012423 Citrullus lanatus Cla012423 N 0.753
MDP0000375866 Malus domestica MDP0000375866 N 0.865
MDP0000301302 Malus domestica MDP0000301302 N 0.741
MDP0000248422 Malus domestica MDP0000248422 N 0.757
MDP0000152128 Malus domestica MDP0000152128 N 0.878
Lus10030108.g Linum usitatissimum Lus10030108.g N 0.750
Lus10019406.g Linum usitatissimum Lus10019406.g N 0.725
Lus10002168.g Linum usitatissimum Lus10002168.g N 0.727
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.716
Gorai.010G062800 Gossypium raimondii Gorai.010G062800 N 0.730
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.851
MTR_4g114785 Medicago truncatula MTR_4g114785 N 0.764
MTR_4g114770 Medicago truncatula MTR_4g114770 N 0.778
MTR_4g010210 Medicago truncatula MTR_4g010210 N 0.724
MTR_0339s0020 Medicago truncatula MTR_0339s0020 N 0.764
MTR_0339s0010 Medicago truncatula MTR_0339s0010 N 0.782
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.743
GSMUA_Achr7G01310_001 Musa acuminata GSMUA_Achr7G01310_001 N 0.736
GSMUA_Achr2G12870_001 Musa acuminata GSMUA_Achr2G12870_001 N 0.740
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.767
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.767
OB12G26010 Oryza brachyantha OB12G26010 N 0.714
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.824
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.838
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.838
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.849
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.730
Bra016665 Brassica rapa Bra016665 N 0.743
Bo8g066360 Brassica oleracea Bo8g066360 N 0.743
BGIOSGA035814 Oryza indica BGIOSGA035814 N 0.718
MBD10 Arabidopsis thaliana AT1G15340 N 0.730
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N 0.793
Ca_19192 Cicer arietinum Ca_19192 N 0.757
Ca_06682 Cicer arietinum Ca_06682 N 0.890
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.757
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.792
TCM_038107 Theobroma cacao TCM_038107 N 0.824
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.784
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N 0.770
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.716
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.849
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.808
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.784
OS12G0620400 Oryza sativa OS12G0620400 N 0.718
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N 0.718
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N 0.718
OPUNC12G17310 Oryza punctata OPUNC12G17310 N 0.718
ONIVA02G25900 Oryza nivara ONIVA02G25900 N 0.718
OMERI12G13490 Oryza meridionalis OMERI12G13490 N 0.718
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N 0.718
OBART12G19140 Oryza barthii OBART12G19140 N 0.718