fgenesh2_pm.scaffold_217000008 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh2_pm.scaffold_217000008 T048615_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Twist2
M01718_2.00 		Mus musculus
NACATATGKN
NMCATATGTN		 PBM
Weirauch et al.(2014)
pTH5033 		0.914 0.942
TWIST1
M08052_2.00 		Homo sapiens
NNNCCAGATGTNN
NNACATCTGGNNN		 ChIP-seq
Mathelier et al.(2014)
MA1123.1 		0.914 0.942
TWIST1
M08722_2.00 		Homo sapiens
WAATBRRWWMCAGATGB
VCATCTGKWWYYVATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A 		0.914 0.942
Twist1
M08766_2.00 		Mus musculus
WAATNRRWWMCAKMTGB
VCAKMTGKWWYYNATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B 		0.914 0.942
TWIST1
M09831_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6_01 		0.914 0.942
TWIST1
M09832_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6 		0.914 0.942
twi
M03605_2.00 		Drosophila melanogaster
MACACRTGKB
VMCAYGTGTK		 SELEX
Nitta et al.(2015)
twi_1 		0.859 0.865
twi
M03606_2.00 		Drosophila melanogaster
MNDCMYRHCGVD
HBCGDYRKGHNK		 SELEX
Nitta et al.(2015)
twi_2 		0.859 0.865
twi
M05955_2.00 		Drosophila melanogaster
VCCAGATGTB
VACATCTGGB		 B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900 		0.859 0.865
twi
M05956_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900 		0.859 0.865
twi
M07538_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 DNaseI footprinting
Mathelier et al.(2014)
MA0249.1 		0.859 0.865
twi
M09657_2.00 		Drosophila melanogaster
AACAKVTGBBVD
HBVVCABMTGTT		 Misc
Kulakovskiy et al.(2009)
twi 		0.859 0.865
twi
M09892_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TWI_Q6 		0.859 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pm.scaffold_217000008 bHLH 95 146

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I
cassava35062.m1 Manihot esculenta cassava35062.m1 I
cassava41192.m1 Manihot esculenta cassava41192.m1 I
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I
Cla006315 Citrullus lanatus Cla006315 I
Cla011674 Citrullus lanatus Cla011674 I
Cucsa.251030 Cucumis sativus Cucsa.251030 I
DREB1A Arabidopsis thaliana AT4G25480 D
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I
GLYMA09G27180 Glycine max GLYMA09G27180 I
GLYMA10G38440 Glycine max GLYMA10G38440 I
GLYMA20G29410 Glycine max GLYMA20G29410 I
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I
Lus10019455.g Linum usitatissimum Lus10019455.g I
Lus10027412.g Linum usitatissimum Lus10027412.g I
Lus10031657.g Linum usitatissimum Lus10031657.g I
mgf026642m Mimulus guttatus mgf026642m I
MTR_6g465510 Medicago truncatula MTR_6g465510 I
MTR_6g465690 Medicago truncatula MTR_6g465690 I
MTR_6g466000 Medicago truncatula MTR_6g466000 I
MTR_6g466130 Medicago truncatula MTR_6g466130 I
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I
PK23332.1 Cannabis sativa PK23332.1 I
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I
TCM_016175 Theobroma cacao TCM_016175 I
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I