Gfo_R000202 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R000202 T135644_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB20
M04599_2.00 		Homo sapiens
NVYATACRTYVN
NBRAYGTATRBN		 SELEX
Yin et al.(2017)
ZBTB20_eDBD_HT-SELEX 		0.783 0.991
ZBTB20
M04600_2.00 		Homo sapiens
NVYATACRTTNN
NNAAYGTATRBN		 SELEX
Yin et al.(2017)
ZBTB20_eDBD_Methyl-HT-SELEX 		0.783 0.991
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000202 C2H2 ZF 577 599
Gfo_R000202 C2H2 ZF 605 627
Gfo_R000202 C2H2 ZF 633 655
Gfo_R000202 C2H2 ZF 661 683
Gfo_R000202 C2H2 ZF 713 735

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000651 Ricinus communis 27810.m000651 N
29908.m006047 Ricinus communis 29908.m006047 N
30169.m006417 Ricinus communis 30169.m006417 N
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N
BGIOSGA023262 Oryza indica BGIOSGA023262 N
BGIOSGA030081 Oryza indica BGIOSGA030081 N
BGIOSGA030484 Oryza indica BGIOSGA030484 N
Bo4g111000 Brassica oleracea Bo4g111000 N
Bo5g015200 Brassica oleracea Bo5g015200 N
Bo5g081360 Brassica oleracea Bo5g081360 N
Bo6g073120 Brassica oleracea Bo6g073120 N
Bo8g092070 Brassica oleracea Bo8g092070 N
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N
Bra003295 Brassica rapa Bra003295 N
Bra007346 Brassica rapa Bra007346 N
Bra014612 Brassica rapa Bra014612 N
Bra019822 Brassica rapa Bra019822 N
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N
Carubv10012013m.g Capsella rubella Carubv10012013m.g N
Carubv10017428m.g Capsella rubella Carubv10017428m.g N
cassava34009.m1 Manihot esculenta cassava34009.m1 N
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N
cassava41737.m1 Manihot esculenta cassava41737.m1 N
cassava44390.m1 Manihot esculenta cassava44390.m1 N
cassava46219.m1 Manihot esculenta cassava46219.m1 N
cassava5227.m1 Manihot esculenta cassava5227.m1 N
Ca_07269 Cicer arietinum Ca_07269 N
Ca_08435 Cicer arietinum Ca_08435 N
Ca_21713 Cicer arietinum Ca_21713 N
Ca_24699 Cicer arietinum Ca_24699 N
Ca_27078 Cicer arietinum Ca_27078 N
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N
Cla000184 Citrullus lanatus Cla000184 N
Cla002714 Citrullus lanatus Cla002714 N
Cla008187 Citrullus lanatus Cla008187 N
Cla008675 Citrullus lanatus Cla008675 N
Cucsa.199850 Cucumis sativus Cucsa.199850 N
Cucsa.242970 Cucumis sativus Cucsa.242970 N
Cucsa.248320 Cucumis sativus Cucsa.248320 N
Cucsa.357260 Cucumis sativus Cucsa.357260 N
DOT5 Vitis vinifera VIT_01s0011g03100 N
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N
GLYMA01G22120 Glycine max GLYMA01G22120 N
GLYMA02G10970 Glycine max GLYMA02G10970 N
GLYMA02G31270 Glycine max GLYMA02G31270 N
GLYMA10G34770 Glycine max GLYMA10G34770 N
GLYMA13G01720 Glycine max GLYMA13G01720 N
GLYMA14G35140 Glycine max GLYMA14G35140 N
GLYMA19G32430 Glycine max GLYMA19G32430 N
GLYMA20G32750 Glycine max GLYMA20G32750 N
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N
GRMZM2G061545 Zea mays GRMZM2G061545 N
GRMZM2G150011 Zea mays GRMZM2G150011 N
GRMZM2G435357 Zea mays GRMZM2G435357 N
GRMZM2G436344 Zea mays GRMZM2G436344 N
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N
LPERR06G17470 Leersia perrieri LPERR06G17470 N
LPERR09G03450 Leersia perrieri LPERR09G03450 N
Lus10021700.g Linum usitatissimum Lus10021700.g N
Lus10031271.g Linum usitatissimum Lus10031271.g N
Lus10031838.g Linum usitatissimum Lus10031838.g N
Lus10033454.g Linum usitatissimum Lus10033454.g N
Lus10035044.g Linum usitatissimum Lus10035044.g N
MDP0000303483 Malus domestica MDP0000303483 N
MDP0000403797 Malus domestica MDP0000403797 N
MDP0000580545 Malus domestica MDP0000580545 N
MDP0000601705 Malus domestica MDP0000601705 N
MDP0000899280 Malus domestica MDP0000899280 N
mgf019910m Mimulus guttatus mgf019910m N
mgf022319m Mimulus guttatus mgf022319m N
MLOC_54308 Hordeum vulgare MLOC_54308 N
MLOC_65351 Hordeum vulgare MLOC_65351 N
MTR_1g093095 Medicago truncatula MTR_1g093095 N
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N
NTT Vitis vinifera VIT_08s0007g08070 N
OB06G28740 Oryza brachyantha OB06G28740 N
OBART02G07320 Oryza barthii OBART02G07320 N
OBART06G20890 Oryza barthii OBART06G20890 N
OBART09G03640 Oryza barthii OBART09G03640 N
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N
OMERI09G02890 Oryza meridionalis OMERI09G02890 N
OMERI09G03940 Oryza meridionalis OMERI09G03940 N
ONIVA02G14580 Oryza nivara ONIVA02G14580 N
ONIVA06G24670 Oryza nivara ONIVA06G24670 N
ONIVA08G08420 Oryza nivara ONIVA08G08420 N
OPUNC06G19020 Oryza punctata OPUNC06G19020 N
OPUNC09G04260 Oryza punctata OPUNC09G04260 N
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N
OS02G0196100 Oryza sativa OS02G0196100 N
OS06G0612300 Oryza sativa OS06G0612300 N
OS09G0307400 Oryza sativa OS09G0307400 N
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N
PK03705.1 Cannabis sativa PK03705.1 N
Pm000471 Prunus mume Pm000471 N
Pm025853 Prunus mume Pm025853 N
Pm029018 Prunus mume Pm029018 N
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N
Sb02g020840 Sorghum bicolor Sb02g020840 N
Sb10g024040 Sorghum bicolor Sb10g024040 N
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N
Si006616m.g Setaria italica Si006616m.g N
Si030360m.g Setaria italica Si030360m.g N
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N
TCM_011858 Theobroma cacao TCM_011858 N
TCM_024788 Theobroma cacao TCM_024788 N
TCM_034881 Theobroma cacao TCM_034881 N
TCM_040610 Theobroma cacao TCM_040610 N
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N
TRIUR3_23735 Triticum urartu TRIUR3_23735 N
TRIUR3_30537 Triticum urartu TRIUR3_30537 N
TT1 Vitis vinifera VIT_18s0001g05860 N
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N
WIP2 Arabidopsis thaliana AT3G57670 N
WIP6 Arabidopsis thaliana AT1G13290 N