SCL5 (Arabidopsis thaliana)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 AT1G50600 T199819_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G50600.1 GRAS 227 597
AT1G50600.2 GRAS 231 601
AT1G50600.3 GRAS 156 526

Links

Other GRAS family TFs
Other Arabidopsis thaliana TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27613.m000642 Ricinus communis 27613.m000642 N 0.753
29949.m000124 Ricinus communis 29949.m000124 N 0.725
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.710
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.748
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.707
Bo5g079990 Brassica oleracea Bo5g079990 N 0.931
Bo6g022330 Brassica oleracea Bo6g022330 N 0.984
Bo9g009240 Brassica oleracea Bo9g009240 N 0.740
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.986
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.710
Bra018860 Brassica rapa Bra018860 N 0.984
Bra026077 Brassica rapa Bra026077 N 0.986
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.710
Cagra.7055s0004 Capsella grandiflora Cagra.7055s0004 N 0.976
Carubv10008830m.g Capsella rubella Carubv10008830m.g N 0.976
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.710
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.756
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.723
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.759
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.730
Ca_09786 Cicer arietinum Ca_09786 N 0.724
Ca_13855 Cicer arietinum Ca_13855 N 0.702
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N 0.702
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.724
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.710
CIGR2 Oryza sativa OS07G0583600 N 0.707
Cla001429 Citrullus lanatus Cla001429 N 0.710
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.710
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.715
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.713
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.775
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.737
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.734
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.743
GLYMA02G46730 Glycine max GLYMA02G46730 N 0.705
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.721
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.724
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.729
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.740
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.729
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.740
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.762
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.704
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.707
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.700
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.704
MDP0000152670 Malus domestica MDP0000152670 N 0.740
MDP0000205236 Malus domestica MDP0000205236 N 0.724
MDP0000284679 Malus domestica MDP0000284679 N 0.724
MDP0000804652 Malus domestica MDP0000804652 N 0.740
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.724
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.710
PAT1 Arabidopsis thaliana AT5G48150 N 0.713
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.705
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.713
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.715
PK15082.1 Cannabis sativa PK15082.1 N 0.724
Pm012019 Prunus mume Pm012019 N 0.748
Pm015021 Prunus mume Pm015021 N 0.740
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.737
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.740
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.732
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.721
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.740
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.729
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.729
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.995
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.713
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.702
TCM_002319 Theobroma cacao TCM_002319 N 0.740
TCM_030733 Theobroma cacao TCM_030733 N 0.770
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.970
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.729