Carubv10018534m.g (Capsella rubella)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Carubv10018534m.g T202363_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018534m GRAS 241 595

Links

Other GRAS family TFs
Other Capsella rubella TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28677.m000055 Ricinus communis 28677.m000055 N 0.730
29692.m000540 Ricinus communis 29692.m000540 N 0.844
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.726
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.722
Bo7g078550 Brassica oleracea Bo7g078550 N 0.923
Bo9g070200 Brassica oleracea Bo9g070200 N 0.797
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.855
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.969
Bra017443 Brassica rapa Bra017443 N 0.844
Bra024875 Brassica rapa Bra024875 N 0.911
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.961
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.864
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.849
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.827
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.847
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.728
Ca_05046 Cicer arietinum Ca_05046 N 0.778
Ca_13295 Cicer arietinum Ca_13295 I 0.707
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.725
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.758
Cla003996 Citrullus lanatus Cla003996 N 0.801
Cla020062 Citrullus lanatus Cla020062 N 0.722
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.722
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.815
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.812
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.709
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.704
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.821
GAI Arabidopsis thaliana AT1G14920 N 0.861
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.855
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.804
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.798
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.776
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.716
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.722
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.714
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.821
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.767
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.705
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.705
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.705
MDP0000237978 Malus domestica MDP0000237978 N 0.787
MDP0000669451 Malus domestica MDP0000669451 I 0.735
mgf008289m Mimulus guttatus mgf008289m N 0.733
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.708
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.725
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.773
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.747
PK14700.1 Cannabis sativa PK14700.1 N 0.815
Pm006304 Prunus mume Pm006304 N 0.787
Pm014329 Prunus mume Pm014329 I 0.747
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.756
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.737
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.829
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.824
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.732
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.784
RGA Arabidopsis thaliana AT2G01570 N 0.933
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.930
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.810
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.722
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.807
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.744
TCM_010965 Theobroma cacao TCM_010965 N 0.832
TCM_019165 Theobroma cacao TCM_019165 N 0.749
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.925
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.846
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.736