fgeneshCV_pg.C_scaffold_1000277 (Chlorella vulgaris)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 fgeneshCV_pg.C_scaffold_1000277 T290867_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.741 0.826
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.741 0.826
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.738 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.738 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.738 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.738 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.738 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.735 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.735 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.735 0.804
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.731 0.783
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.704 0.739
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.686 0.739
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.686 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgeneshCV_pg.C_scaffold_1000277 Myb 53 98

Links

Other Myb/SANT family TFs
Other Chlorella vulgaris TFs

278 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003368 Ricinus communis 29794.m003368 N 0.000
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.000
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.000
Bo4g120510 Brassica oleracea Bo4g120510 N 0.000
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.000
Bra014857 Brassica rapa Bra014857 N 0.000
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.000
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.000
Ca_14896 Cicer arietinum Ca_14896 N 0.000
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.000
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.000
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.000
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.000
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.000
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.000
GSMUA_Achr4G01060_001 Musa acuminata GSMUA_Achr4G01060_001 N 0.000
MDP0000135483 Malus domestica MDP0000135483 N 0.000
MDP0000315125 Malus domestica MDP0000315125 N 0.000
mgf012819m Mimulus guttatus mgf012819m N 0.000
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.000
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.000
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.000
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.000
PK05603.1 Cannabis sativa PK05603.1 N 0.000
Pm005207 Prunus mume Pm005207 N 0.000
Pm005208 Prunus mume Pm005208 N 0.000
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.000
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.000
SIGC Arabidopsis thaliana AT3G53920 N 0.000
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.000
SIGC Vitis vinifera VIT_04s0008g00600 N 0.000
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.000
TCM_037242 Theobroma cacao TCM_037242 N 0.000
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.000