POPTR_0004s21550 (Populus trichocarpa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 POPTR_0004s21550 T320740_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.898 0.898
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s21550.1 RWP-RK 596 644

Links

Other RWP-RK family TFs
Other Populus trichocarpa TFs

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28677.m000055 Ricinus communis 28677.m000055 N
29692.m000540 Ricinus communis 29692.m000540 N
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N
Bo7g078550 Brassica oleracea Bo7g078550 N
Bo9g070200 Brassica oleracea Bo9g070200 N
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N
Bra017443 Brassica rapa Bra017443 N
Bra024875 Brassica rapa Bra024875 N
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N
Carubv10008833m.g Capsella rubella Carubv10008833m.g N
Carubv10018534m.g Capsella rubella Carubv10018534m.g N
cassava14484.m1 Manihot esculenta cassava14484.m1 N
cassava15077.m1 Manihot esculenta cassava15077.m1 N
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I
Ca_05046 Cicer arietinum Ca_05046 N
Ca_13295 Cicer arietinum Ca_13295 I
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N
Cla003996 Citrullus lanatus Cla003996 N
Cla020062 Citrullus lanatus Cla020062 N
Cucsa.006260 Cucumis sativus Cucsa.006260 N
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I
F775_03572 Aegilops tauschii F775_03572 N
GAI Arabidopsis thaliana AT1G14920 N
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N
GAI1 Vitis vinifera VIT_01s0011g05260 N
GLYMA05G27190 Glycine max GLYMA05G27190 N
GLYMA08G10140 Glycine max GLYMA08G10140 N
GLYMA11G33720 Glycine max GLYMA11G33720 I
GLYMA18G04500 Glycine max GLYMA18G04500 I
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N
GRMZM2G144744 Zea mays GRMZM2G144744 N
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N
Lus10009133.g Linum usitatissimum Lus10009133.g N
Lus10017626.g Linum usitatissimum Lus10017626.g N
Lus10033583.g Linum usitatissimum Lus10033583.g N
MDP0000237978 Malus domestica MDP0000237978 N
MDP0000669451 Malus domestica MDP0000669451 I
mgf008289m Mimulus guttatus mgf008289m N
mgf025772m Mimulus guttatus mgf025772m N
MTR_3g065980 Medicago truncatula MTR_3g065980 N
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N
PK14700.1 Cannabis sativa PK14700.1 N
Pm006304 Prunus mume Pm006304 N
Pm014329 Prunus mume Pm014329 I
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N
RGA Arabidopsis thaliana AT2G01570 N
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N
TCM_010965 Theobroma cacao TCM_010965 N
TCM_019165 Theobroma cacao TCM_019165 N
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I