Carubv10017800m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10017800m.g T007892_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.820 1.000
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.755 0.880
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.680 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017800m AP2 26 77

Links

Other AP2 family TFs
Other Capsella rubella TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05774 Aegilops tauschii F775_05774 I 0.000
F775_32062 Aegilops tauschii F775_32062 I 0.000
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I 0.000
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.000
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.680
DREB2G Arabidopsis thaliana AT5G18450 D 0.680
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.000
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.680
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.000
Bo4g190040 Brassica oleracea Bo4g190040 I 0.000
Bo9g155940 Brassica oleracea Bo9g155940 I 0.680
Bo9g177130 Brassica oleracea Bo9g177130 I 0.000
Bra002159 Brassica rapa Bra002159 I 0.680
Bra017011 Brassica rapa Bra017011 I 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.000
PK07829.1 Cannabis sativa PK07829.1 I 0.000
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.000
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.000
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.000
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.000
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.000
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.000
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.766
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.000
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.000
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.680
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.000
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.000
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.000
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.000
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.000
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.768
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.000
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.000
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.000
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.755
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.000
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.000
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.000
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.000
MDP0000147009 Malus domestica MDP0000147009 I 0.000
MDP0000153866 Malus domestica MDP0000153866 I 0.000
MDP0000165880 Malus domestica MDP0000165880 I 0.000
MDP0000290585 Malus domestica MDP0000290585 I 0.000
MDP0000446783 Malus domestica MDP0000446783 I 0.000
MDP0000703626 Malus domestica MDP0000703626 I 0.759
MDP0000871361 Malus domestica MDP0000871361 I 0.759
MDP0000880312 Malus domestica MDP0000880312 I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.000
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.000
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.000
mgf017629m Mimulus guttatus mgf017629m I 0.000
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.000
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.000
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.000
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.000
OBART01G04210 Oryza barthii OBART01G04210 I 0.000
OB01G13930 Oryza brachyantha OB01G13930 I 0.000
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.000
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.000
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.000
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.000
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.000
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.000
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.000
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.000
DREB2A Oryza sativa OS01G0165000 I 0.000
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.000
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.000
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.000
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.000
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.000
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.000
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.000
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.000
Pm015262 Prunus mume Pm015262 I 0.000
Pm018989 Prunus mume Pm018989 I 0.000
Pm025865 Prunus mume Pm025865 I 0.759
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.000
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.759
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.000
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.000
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.680
29729.m002292 Ricinus communis 29729.m002292 I 0.000
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I 0.000
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.000
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.000
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.000
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.000
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.684
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.684
Si002067m.g Setaria italica Si002067m.g I 0.000
Si022619m.g Setaria italica Si022619m.g I 0.000
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.000
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.000
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.000
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.000
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.000
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.000
TCM_043275 Theobroma cacao TCM_043275 I 0.000
TCM_043302 Theobroma cacao TCM_043302 I 0.000
TCM_043306 Theobroma cacao TCM_043306 I 0.000
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.000
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.000
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.000
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.000
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.000
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.000
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.000
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.000
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.000