CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_7g101280
(
Medicago truncatula
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
MTR_7g101280
T019865_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.742
0.742
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES81853
B3
131
233
FAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSANPPLQDIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFLRSENGDLHVGIRRAK
Links
Other
B3
family TFs
Other
Medicago truncatula
TFs
188 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_005_00234
Aquilegia coerulea
Aquca_005_00234
N
0.000
PAT1
Arabidopsis lyrata
scaffold_801100.1
N
0.000
SCL21
Arabidopsis lyrata
scaffold_303269.1
N
0.000
PAT1
Arabidopsis thaliana
AT5G48150
N
0.000
Bostr.5224s0004
Boechera stricta
Bostr.5224s0004
N
0.000
Bostr.19424s0023
Boechera stricta
Bostr.19424s0023
N
0.000
Bo2g149670
Brassica oleracea
Bo2g149670
N
0.000
Bo7g030310
Brassica oleracea
Bo7g030310
N
0.000
Bo7g089080
Brassica oleracea
Bo7g089080
N
0.000
Bo9g009240
Brassica oleracea
Bo9g009240
N
0.000
Bo9g009260
Brassica oleracea
Bo9g009260
N
0.000
Bra015156
Brassica rapa
Bra015156
N
0.000
Bra020715
Brassica rapa
Bra020715
N
0.000
Bra036185
Brassica rapa
Bra036185
N
0.000
Bra037509
Brassica rapa
Bra037509
N
0.000
PK09018.1
Cannabis sativa
PK09018.1
N
0.000
Cagra.2766s0005
Capsella grandiflora
Cagra.2766s0005
N
0.000
Cagra.1158s0007
Capsella grandiflora
Cagra.1158s0007
N
0.000
Carubv10026289m.g
Capsella rubella
Carubv10026289m.g
N
0.000
Carubv10015685m.g
Capsella rubella
Carubv10015685m.g
N
0.000
evm.TU.supercontig_136.17
Carica papaya
evm.TU.supercontig_136.17
N
0.000
Ca_09786
Cicer arietinum
Ca_09786
N
0.000
Cla001429
Citrullus lanatus
Cla001429
N
0.000
Ciclev10014845m.g
Citrus clementina
Ciclev10014845m.g
N
0.000
orange1.1g009376m.g
Citrus sinensis
orange1.1g009376m.g
N
0.000
Cucsa.120390
Cucumis sativus
Cucsa.120390
N
0.000
Eucgr.A01051
Eucalyptus grandis
Eucgr.A01051
N
0.000
Thhalv10004053m.g
Eutrema salsugineum
Thhalv10004053m.g
N
0.000
Thhalv10002541m.g
Eutrema salsugineum
Thhalv10002541m.g
N
0.000
gene21592-v1.0-hybrid
Fragaria vesca
gene21592-v1.0-hybrid
N
0.000
GLYMA02G47640
Glycine max
GLYMA02G47640
N
0.000
GLYMA14G01020
Glycine max
GLYMA14G01020
N
0.000
Gorai.001G192800
Gossypium raimondii
Gorai.001G192800
N
0.000
Gorai.007G167000
Gossypium raimondii
Gorai.007G167000
N
0.000
Lus10012323.g
Linum usitatissimum
Lus10012323.g
N
0.000
Lus10006369.g
Linum usitatissimum
Lus10006369.g
N
0.000
Lus10003772.g
Linum usitatissimum
Lus10003772.g
N
0.000
MDP0000804652
Malus domestica
MDP0000804652
N
0.000
MDP0000152670
Malus domestica
MDP0000152670
N
0.000
cassava8885.m1
Manihot esculenta
cassava8885.m1
N
0.000
cassava34106.m1
Manihot esculenta
cassava34106.m1
N
0.000
MTR_5g097480
Medicago truncatula
MTR_5g097480
N
0.000
POPTR_0014s16230
Populus trichocarpa
POPTR_0014s16230
N
0.000
Pm015021
Prunus mume
Pm015021
N
0.000
PRUPE_ppa003702mg
Prunus persica
PRUPE_ppa003702mg
N
0.000
27613.m000642
Ricinus communis
27613.m000642
N
0.000
29949.m000124
Ricinus communis
29949.m000124
N
0.000
SapurV1A.0054s0160
Salix purpurea
SapurV1A.0054s0160
N
0.000
Solyc07g047950.1
Solanum lycopersicum
Solyc07g047950.1
N
0.000
PGSC0003DMG400006132
Solanum tuberosum
PGSC0003DMG400006132
N
0.000
TCM_002319
Theobroma cacao
TCM_002319
N
0.000
VIT_12s0057g00560
Vitis vinifera
VIT_12s0057g00560
N
0.000