cassava39049.m1 (Manihot esculenta)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 cassava39049.m1 T022282_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava39049.m1 B3 109 214

Links

Other B3 family TFs
Other Manihot esculenta TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_20738 Aegilops tauschii F775_20738 I 0.703
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.822
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.861
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.762
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.792
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.812
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.812
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.851
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.713
NGA3 Arabidopsis thaliana AT1G01030 N 0.792
NGA1 Arabidopsis thaliana AT2G46870 N 0.812
NGA2 Arabidopsis thaliana AT3G61970 N 0.861
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.713
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.713
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.851
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.822
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.792
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.861
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.812
Bo3g001110 Brassica oleracea Bo3g001110 N 0.792
Bo3g039420 Brassica oleracea Bo3g039420 N 0.822
Bo4g006900 Brassica oleracea Bo4g006900 N 0.802
Bo4g099000 Brassica oleracea Bo4g099000 N 0.832
Bo4g197410 Brassica oleracea Bo4g197410 I 0.822
Bo5g002790 Brassica oleracea Bo5g002790 N 0.792
Bo6g079210 Brassica oleracea Bo6g079210 N 0.832
Bo8g097490 Brassica oleracea Bo8g097490 N 0.842
Bo9g176470 Brassica oleracea Bo9g176470 N 0.703
Bra000434 Brassica rapa Bra000434 N 0.812
Bra003482 Brassica rapa Bra003482 N 0.861
Bra004501 Brassica rapa Bra004501 N 0.802
Bra007646 Brassica rapa Bra007646 N 0.842
Bra014415 Brassica rapa Bra014415 N 0.842
Bra030497 Brassica rapa Bra030497 N 0.782
Bra033294 Brassica rapa Bra033294 N 0.772
Bra040478 Brassica rapa Bra040478 I 0.832
PK04952.1 Cannabis sativa PK04952.1 I 0.713
PK11025.1 Cannabis sativa PK11025.1 I 0.842
PK21157.1 Cannabis sativa PK21157.1 I 0.881
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.812
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.861
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.713
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.792
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.723
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.723
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.792
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.713
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.851
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.812
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.703
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.891
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.891
Ca_00826 Cicer arietinum Ca_00826 N 0.703
Ca_01368 Cicer arietinum Ca_01368 I 0.822
Ca_25633 Cicer arietinum Ca_25633 I 0.713
Cla005055 Citrullus lanatus Cla005055 N 0.871
Cla006845 Citrullus lanatus Cla006845 I 0.861
Cla014858 Citrullus lanatus Cla014858 N 0.808
Cla017937 Citrullus lanatus Cla017937 I 0.703
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.703
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.851
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.901
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.851
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.901
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.703
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.792
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.891
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.871
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.703
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.951
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.881
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.812
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.861
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.792
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.703
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.901
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.703
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.842
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.713
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.822
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.842
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.713
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.842
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.822
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.881
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.871
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.850
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.871
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.822
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.951
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.723
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.733
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.703
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.792
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.723
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.772
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.822
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.812
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.782
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.733
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.851
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.851
MDP0000138163 Malus domestica MDP0000138163 N 0.802
MDP0000229742 Malus domestica MDP0000229742 N 0.733
MDP0000288808 Malus domestica MDP0000288808 N 0.782
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.703
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.871
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.871
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.703
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.703
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.842
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.832
mgf019085m Mimulus guttatus mgf019085m N 0.713
mgf023686m Mimulus guttatus mgf023686m I 0.723
mgf023769m Mimulus guttatus mgf023769m N 0.842
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.851
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.822
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.802
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.713
OBART02G28100 Oryza barthii OBART02G28100 N 0.782
OBART03G01650 Oryza barthii OBART03G01650 N 0.832
OBART04G22880 Oryza barthii OBART04G22880 I 0.812
OBART10G17010 Oryza barthii OBART10G17010 N 0.812
OB02G35380 Oryza brachyantha OB02G35380 I 0.802
OB03G11610 Oryza brachyantha OB03G11610 N 0.832
OB10G24100 Oryza brachyantha OB10G24100 N 0.821
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.782
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.832
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.812
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.812
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.782
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.832
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.812
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.812
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.782
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.832
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.802
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.812
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.711
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.782
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.832
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.822
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.832
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.802
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.812
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.782
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.782
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.832
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.812
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.782
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.733
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.812
OS02G0683500 Oryza sativa OS02G0683500 N 0.782
OS03G0120900 Oryza sativa OS03G0120900 N 0.832
OS04G0581400 Oryza sativa OS04G0581400 I 0.812
OS10G0537100 Oryza sativa OS10G0537100 N 0.812
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.752
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.782
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.703
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.703
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.812
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.822
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.822
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.733
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.768
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.733
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.812
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.871
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.842
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.891
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.842
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.713
Pm024248 Prunus mume Pm024248 I 0.881
Pm028725 Prunus mume Pm028725 N 0.921
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.921
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.881
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.713
30032.m000462 Ricinus communis 30032.m000462 N 0.713
30068.m002615 Ricinus communis 30068.m002615 I 0.960
30076.m004471 Ricinus communis 30076.m004471 I 0.881
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.851
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.842
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.871
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.713
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.713
Si011823m.g Setaria italica Si011823m.g N 0.802
Si020241m.g Setaria italica Si020241m.g N 0.782
Si036864m.g Setaria italica Si036864m.g N 0.832
Si039972m.g Setaria italica Si039972m.g N 0.733
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.832
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.832
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.861
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.733
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.842
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.842
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.733
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.881
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.745
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.822
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.752
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.812
TCM_005014 Theobroma cacao TCM_005014 I 0.881
TCM_015590 Theobroma cacao TCM_015590 I 0.891
TCM_022729 Theobroma cacao TCM_022729 N 0.723
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.743
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.703
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.713
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.703
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.723
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.802
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.727
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.703
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.871
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.822
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.762
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.703
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.703
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.792
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.792
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.772
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.714
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.733
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.891
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.713
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.901
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.792
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.752
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.851
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.802
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.792
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.703
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.733
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.713